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83 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			FA
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE15556	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Xenopus tropicalis	11	FA	Nelson C Lau	Sep 01, 2009
GSE21512	Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED FA TXT SRA Run Selector	Christopher Benner	May 27, 2010
GSE21978	A global network of transcription factors, involving E2A, EBF1 and FOXO1, that orchestrates the B cell fate	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BED FA TXT SRA Run Selector	Christopher Benner	Jun 13, 2010
GSE22609	Genome-Wide Maps of WT and DBDmut Estrogen Receptor in Human Breast Cancer Cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED BEDGRAPH FA	Joshua D Stender	Jun 30, 2010
GSE22610	Genome-Wide Analysis of Estrogen Receptor-α DNA Binding and Tethering Mechanisms	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	26	BED BEDGRAPH CEL FA	Joshua D Stender	Jun 30, 2010
GSE23619	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Illumina sequencing data)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BED FA TXT SRA Run Selector	Christopher Benner	Jan 01, 2011
GSE23622	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	55	BED FA TXT	Christopher Benner	Jan 01, 2011
GSE27823	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells [ChIP-Seq, Gro-Seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED BEDGRAPH FA SRA Run Selector	Christopher Benner	May 15, 2011
GSE27824	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	42	BED BEDGRAPH FA	Christopher Benner	May 15, 2011
GSE30992	An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Homo sapiens synthetic construct	16	BOWTIE FA TXT	Xinchen Wang	Sep 15, 2011
GSE31006	An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	FA SRA Run Selector	Xinchen Wang	Sep 15, 2011
GSE30490	Genome-wide maps of H3K4me3 and H3K27me3 in HY(Hwayong) and chd1(chr729) rice.	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	4	FA FASTQ TXT WIG SRA Run Selector	yongfeng hu	Mar 10, 2012
GSE50944	NCoR Repression of LXRs Restricts Macrophage Biosynthesis of Insulin-Sensitizing Omega 3 Fatty Acids	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	23	BEDGRAPH FA TXT SRA Run Selector	Nathanael Judge Spann	Oct 09, 2013
GSE48660	An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	FA SRA Run Selector	Jinke Wang	May 05, 2014
GSE49113	Epigenetic reprogramming in pancreatic acinar cell in the absence of MIST1	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	FA TAR TXT SRA Run Selector	Christopher Pin	Jul 21, 2014
GSE56939	Interrelationships between replication infidelity and genome composition	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	72	FA GFF3 TXT SRA Run Selector	Scott Alexander Lujan	Aug 25, 2014
GSE55914	RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent pre-mRNAs and chromatin sites	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BIGWIG FA TDF SRA Run Selector	Jesse Engreitz	Sep 01, 2014
GSE58031	Endogenous germline nuclear RNAi-mediated transcriptional silencing and histone H3 lysine 9 methylation in defined regions of the Caenorhabditis elegans genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	21	FA TXT SRA Run Selector	Sam Guoping Gu	Jan 01, 2015
GSE65889	Novel nucleosomal particles containing core histones and linker DNA but no histone H1	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae Synthetic plasmid	31	BW FA TXT SRA Run Selector	David Johannes Clark	Sep 23, 2015