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16191 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			BED
GSE36375	Rev-erb(alpha) and (beta) Coordinately Protect the Circadian Clock and Normal Metabolic Function	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED TXT SRA Run Selector	Logan J Everett	Mar 09, 2012
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE61343	Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics	Third-party reanalysis Methylation profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Pan troglodytes	65	BED	Irene Gallego Romero	Sep 11, 2014
GSE61775	Context-specific regulation of BMAL1 target genes during the circadian cycle in mammals	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	58	BED BW WIG SRA Run Selector	Jonathan Aryeh Sobel	Dec 31, 2016
GSE64832	UTX inhibition as selective epigenetic therapy against TAL1-driven T cell acute lymphoblastic leukemia	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED BW SRA Run Selector	Ottawa Hospital Research Institute	Feb 01, 2016
GSE69919	Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics [ChIP-Seq]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Pan troglodytes	9	BED TXT SRA Run Selector	Irene Gallego Romero	Jun 17, 2015
GSE71397	Identification of Arabidopsis thaliana PRR9 regulated clock components and circadian outputs through genome-wide binding sites analysis	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT XLS SRA Run Selector	Tiffany L Liu	Dec 03, 2015
GSE72089	Validation of THS-seq method, and comparison of published ENCODE DNase-seq data, self-generated ATAC-seq data and published ATAC-seq data, and THS-seq data for quantitation of chromatin accessibility.	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	BED SRA Run Selector	Kun Zhang	Jan 09, 2016
GSE72300	T-cell ALL in response to TAL1-KD, UTX-KD, and GSKJ4 treatment	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	17	BED BW	Ottawa Hospital Research Institute	Feb 01, 2016
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Third-party reanalysis Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE76586	The control of rRNA synthesis during the directed differentiation of human embryonic stem cells precedes heterochromatin formation.	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	21	BED XLSX SRA Run Selector	Jessica L Woolnough	Sep 16, 2016
GSE80791	CpG island mediated linear and spatial gene partitioning (ChIP-seq)	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BED	Jonghwan Kim	Feb 15, 2018
GSE85273	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	11	BED BEDGRAPH SRA Run Selector	Rebekah M Charney	Mar 30, 2017
GSE88699	High activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED BIGWIG TXT SRA Run Selector	Alberto Termanini	Mar 13, 2017
GSE88702	High activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BED BIGWIG	Alberto Termanini	Mar 13, 2017
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes	Third-party reanalysis Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	15	BED BW GFF TXT SRA Run Selector	David B. Lyons	Nov 15, 2017
GSE97095	Lamina Associated Domains dependent of chromatin state and A-type lamins	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BED	Karen Reddy	Mar 27, 2020
GSE98509	MYOD Remodeling of the Genome Architecture during Myogenic Conversion of Somatic Cells	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	16	BED BW CSV NARROWPEAK TXT SRA Run Selector	Alessandra Dall'Agnese	Sep 10, 2019
GSE98714	Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer [ChIP-seq]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BED SRA Run Selector	Qian Du	Jan 23, 2019
GSE98732	Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	35	BED BW	Qian Du	Jan 23, 2019