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16248 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			BED
GSE15909	Gene expression and UH2A ChIP-Seq binding analysis in Bmi1 knock-out and wild type MEFs	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED CEL CHP TXT	Raja Jothi	May 20, 2009
GSE15814	High resolution analysis of epigenetic changes associated with X inactivation, ChIP-Seq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED WIG SRA Run Selector	H.G. Stunnenberg	Jun 06, 2009
GSE15884	High resolution analysis of epigenetic changes associated with X inactivation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array	Mus musculus	58	BED GFF TXT WIG	H.G. Stunnenberg	Jun 06, 2009
GSE12616	Genome-wide Analysis of Histone Methylations in Memory CD8+ T Cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED GRAPH SRA Run Selector	Chongzhi Zang	Jun 12, 2009
GSE17001	High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED TXT SRA Run Selector	Emily Hodges	Jul 08, 2009
GSE13308	Chromatin architecture organized by histone variants H3.3 and H2A.Z in the human genome	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED TXT SRA Run Selector	Chongzhi Zang	Jul 26, 2009
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17312	BI Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	633	BAM BED CEL WIG SRA Run Selector	BROAD INSTITUTE	Aug 05, 2009
GSE16657	Chromatin Poises miRNA- and Protein-coding Genes for Expression	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BED SRA Run Selector	Keji Zhao	Aug 10, 2009
GSE15735	Genome-wide mapping of HATs and HDACs in human CD4+ T cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	41	BED CEL CHP TXT XLS ZIP SRA Run Selector	Chongzhi Zang	Aug 20, 2009
GSE17284	Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	5	BED TXT SRA Run Selector	Sam Guoping Gu	Aug 31, 2009
GSE14025	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	4	BED TXT SRA Run Selector	Gert Jan Veenstra	Sep 15, 2009
GSE17917	Distinct epigenomic landscapes of pluripotent and lineage-committed human cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	BED TXT SRA Run Selector	Bing Ren	Oct 13, 2009
GSE18292	Chromatin States in Human ES Cells Reveal Key Regulatory Sequences and Genes Involved in Pluripotency and Self-renewal	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	BED TXT SRA Run Selector	Bing Ren	Oct 14, 2009
GSE18572	Discrete genomic domains exhibit co-occurrence of H3K9me3 and H3K27me3 histone modifications throughout Drosophila	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	49	BED BEDGRAPH TXT	Kevin P. White	Oct 16, 2009
GSE17642	Genome-wide mapping of Eset-binding sites and H3K9me3 state in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	3	BED TXT SRA Run Selector	Mikael Huss	Nov 04, 2009
GSE18829	Discovering Hematopoietic Mechanisms Through Genome-Wide Analysis of GATA Factor Chromatin Occupancy	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus	11	BED TXT	Emery H. Bresnick	Nov 25, 2009
GSE18868	Genome-wide maps of GATA factor occupancy in K562 cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	BED TXT SRA Run Selector	Emery H. Bresnick	Nov 25, 2009
GSE19235	Genomic targets of the KRAB and scan domain-containing zinc finger protein 263 (ZNF263).	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED TXT SRA Run Selector	Flora Vaccarino	Dec 03, 2009