GEO Browser - GEO

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41 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing			WIG
GSE248551	FACT-mediated depletion of macroH2A-nucleosome regulates the cell response of macrophage	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	WIG	ji dengyu	May 01, 2025
GSE159276	G-quadruplexes are promoter elements and chromatin organizers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	63	WIG SRA Run Selector	Amal Makrini	Apr 15, 2025
GSE240979	Deciphering the role of IRF4 and its interacting proteins in differentiated regulatory and T helper 17 cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	WIG	Matthias Klein	Mar 04, 2025
GSE273578	A biophysical basis for the spreading behavior and limited diffusion of Xist [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	WIG	Jeannie T Lee	Jan 17, 2025
GSE283392	Distinct use of super-enhancer elements controls cell type-specific CD25 transcription and function	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	25	BEDPE WIG	Peng Li	Dec 03, 2024
GSE248027	ASXL1/2 links MLL4 and BAP1 on enhancers	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	WIG	Kai Ge	Apr 30, 2024
GSE261169	Archival chromatin sequencing in formalin-fixed mouse specimens [FAIRE and Mnase]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	32	WIG	Erin Elizabeth Hahn	Mar 15, 2024
GSE234295	Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	124	MCOOL WIG	Dirk Schuebeler	Mar 11, 2024
GSE250225	Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	WIG	Dirk Schuebeler	Mar 11, 2024
GSE250226	Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	WIG	Dirk Schuebeler	Mar 11, 2024
GSE250229	Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	WIG	Dirk Schuebeler	Mar 11, 2024
GSE207058	BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	BEDGRAPH BIGWIG WIG XLSX	Elena Pugacheva	Jan 03, 2024
GSE236182	Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	BEDGRAPH BEDPE BIGWIG BW HIC TXT WIG	Sergio Niñerola	Dec 04, 2023
GSE242240	Phase Separation of FOXA1 Unpacks the Condensed Chromatin to Function as a Pioneer Factor (NIH-3T3 cells)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	WIG	ji yiliang	Dec 03, 2023
GSE210815	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	147	BEDGRAPH TXT WIG	Xiao Ge	Oct 31, 2023
GSE210816	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	TXT WIG	Xiao Ge	Oct 31, 2023
GSE210817	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	571	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Oct 31, 2023
GSE222972	Epigenomic analysis of regulatory evolution in mole rats	Genome binding/occupancy profiling by high throughput sequencing Other	Cavia porcellus Fukomys damarensis Heterocephalus glaber Mus musculus	160	NARROWPEAK WIG	Diego Villar	Aug 21, 2023
GSE221259	Global transcriptional landscape of CtBP2 in pancreatic beta cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	10	BED BW WIG	Motohiro Sekiya	Aug 08, 2023
GSE200472	NOTCH-YAP1/TEAD-DNMT1 axis drives hepatocyte reprogramming into intrahepatic cholangiocarcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BW TAB WIG	Shuchang Liu	Jul 25, 2023