GEO Browser - GEO

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40 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing			TAB
GSE138017	H3K4methylation in Setd1a loss-of-function Raw264.7 cells upon LPS or Dex+LPS stimulation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	48	BW TAB TXT SRA Run Selector	Franziska Greulich	Dec 31, 2020
GSE152663	SWI/SNF inactivation in the endometrial epithelium leads to loss of epithelial integrity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16	BROADPEAK TAB	Ronald L. Chandler	Oct 20, 2020
GSE161475	High dose IFN-𝛽 activates GAF to enhance expression of ISGF3 target genes in epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	70	CSV TAB TXT SRA Run Selector	Quen Cheng	Mar 05, 2021
GSE164906	"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Genome variation profiling by high throughput sequencing	Mus musculus	476	BW TAB VCF	Yongbing Zhao	Jul 21, 2022
GSE171184	Integration of Feeding Behaviour by the Liver Circadian Clock Reveals Network Dependency of Metabolic Rhythms	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	38	BW NARROWPEAK TAB	Bioinformatics Unit	Jun 01, 2021
GSE171771	Genome-wide quantitative functional enhancer map of mESCs, in the pluripotent state and after induced differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED BW NARROWPEAK TAB SRA Run Selector	Laura V Glaser	Oct 21, 2021
GSE176461	DNA sequence and chromatin modifiers determine epigenetic bistability at imprinting control regions	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	7	COV TAB WIG	Tuncay Baubec	Jul 20, 2022
GSE183419	Characterization of active chromatin marks by CUT&Tag after FOXD3 depletion	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BIGWIG TAB SRA Run Selector	Robert Blelloch	Apr 30, 2023
GSE183619	BAF complex cooperates with c-Myc to orchestrate early fate decisions of CD8 T cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array	Mus musculus	101	BED BIGWIG CEL TAB	Douglas R Green	Apr 24, 2022
GSE190813	Pan-AMPK activator O304 prevents gene expression changes and re-mobilization of histone marks in islets of diet-induced obese mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	TAB	Ana Rosa López-Pérez	Dec 20, 2021
GSE195840	Characterization and function of transcriptional elongation during zygotic genome activation in mouse embryos	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	123	BW TAB	Tamas Schauer	Oct 01, 2022
GSE198179	A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination [Tri-C]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	61	TAB	Maximilian Christian von der Linde	Jan 20, 2023
GSE198182	A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	69	BW MCOOL TAB	Maximilian Christian von der Linde	Jan 20, 2023
GSE199530	PRC2.1 and PRC2.2 Specific Accessory Proteins Drive Recruitment of Different Forms of Canonical PRC1	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	189	BW TAB	Cheng Wang	Apr 06, 2023
GSE199541	Dissecting the roles of MBD2 isoforms and domains in regulating NuRD complex func-tion during cellular differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	TAB WIG	Tuncay Baubec	May 23, 2023
GSE200472	NOTCH-YAP1/TEAD-DNMT1 axis drives hepatocyte reprogramming into intrahepatic cholangiocarcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BW TAB WIG	Shuchang Liu	Jul 25, 2023
GSE201074	Spatiotemporal co-dependency between macrophages and exhausted CD8+ T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BW TAB	Arjun Arkal Rao	Apr 26, 2022
GSE201655	An activity-specificity trade-off encoded in human transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	100	CSV MTX NARROWPEAK TAB TSV	Alexandre P Magalhaes	Feb 27, 2024
GSE207572	Zfp281 and Zfp148 control CD4+ T cell thymic development and Th2 functions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BW CSV H5 JPG JSON PNG TAB TBI TIFF TSV	Remy Bosselut	Nov 10, 2023
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024