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566 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing			SRA Run Selector
GSE158435	Single-cell joint detection of chromatin occupancy and transcriptome enables higher-dimensional epigenomic reconstructions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16491	BED BW TXT SRA Run Selector	Haiqing Xiong	Mar 05, 2021
GSE173679	Orchestrating endothelial cell fate regulation and function during multiple organs’ development, stress and aging at single cell resolution	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4059	BED SRA Run Selector	Yaxi Liu	Apr 30, 2024
GSE129327	CoBATCH for high-throughput single-cell epigenomic profiling [EC_CoBATCH]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3057	BED SRA Run Selector	Haiqing Xiong	Jul 15, 2019
GSE129328	CoBATCH for high-throughput single-cell epigenomic profiling [native ESC coBATCH]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2161	BED SRA Run Selector	Haiqing Xiong	Jul 15, 2019
GSE146128	Functional Dissection of Transcription Factor Networks Governing Haematopoietic Progenitor States	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1520	BED BW CSV SRA Run Selector	Bertie Gottgens	Oct 26, 2020
GSE132846	CoBATCH for high-throughput single-cell epigenomic profiling [EC_CoBATCH_Pol_II]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	852	BED SRA Run Selector	Haiqing Xiong	Jul 15, 2019
GSE146508	Transcriptome and open chromatin analysis of 5-month mouse liver and blood by the TaRGET II consortium	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	849	CSV NARROWPEAK SRA Run Selector	Daofeng Li	May 20, 2020
GSE215972	Epigenomic tomography for probing spatially-defined chromatin state in the brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	508	BW SRA Run Selector	Chang Lu	Oct 18, 2023
GSE132844	CoBATCH for high-throughput single-cell epigenomic profiling [EC_CoBATCH_H3K36me3]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	388	BED SRA Run Selector	Haiqing Xiong	Jul 15, 2019
GSE210138	Identification of cross-species preserved cis-regulatory elements containing type 2 diabetes GWAS variants	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	386	BED BIGWIG NARROWPEAK SRA Run Selector	Carol Bult	Dec 31, 2023
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE158730	NFI transcription factors regulate zonal olfactory receptor expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	237	BIGWIG BW CIF CLOUPE COOL CSV H5 JSON PNG TIFF TXT SRA Run Selector	Elizaveta Bashkirova	Jun 14, 2023
GSE184894	SMYD5 catalyzes histone H3 lysine 36 trimethylation at promoters	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	223	BW TXT SRA Run Selector	Dong Fang	Apr 26, 2022
GSE160764	Epigenetic signals that direct cell type specific interferon beta response in mouse cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	221	BED MTX TAR TSV TXT SRA Run Selector	Markus Muckenhuber	Dec 31, 2022
GSE184884	GPS2 sensitizes IL4 pathway via the recruitments of KDM1A	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	203	BEDGRAPH TXT XLSX SRA Run Selector	Zhiqiang Huang	Dec 14, 2022
GSE162739	BAP1 activity regulates Polycomb occupancy and global chromatin condensation counteracting diffuse PCGF3/5-dependent H2AK119ub1 deposition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	192	BED RPKM TSV TXT SRA Run Selector	Federico Rossi	Jun 27, 2021
GSE132446	Refined spatial temporal epigenomic profiling reveals intrinsic connection between PRDM9-mediated H3K4me3 and the fate of double-stranded breaks	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	186	BED BIGWIG SRA Run Selector	Yuxuan Zheng	Feb 12, 2020
GSE163853	Genome-wide maps of chromatin state in mouse and human glioblastoma cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	186	BED BW SRA Run Selector	Xingqi Chen	Mar 20, 2022
GSE164935	Genetic control of pluripotency epigenome informs differentiation bias in mouse embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	180	CSV MTX TSV SRA Run Selector	Christopher Baker	Oct 05, 2021
GSE178982	Enhancer-promoter interactions and transcription are maintained upon acute loss of CTCF, cohesin, WAPL, and YY1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	173	BW MCOOL SRA Run Selector	Xavier Darzacq	Jul 15, 2021