GEO Browser - GEO

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75 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing			HIC
GSE246755	Enhancer adoption by an LTR retrotransposon generates viral-like particles causing developmental limb phenotypes	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	43	BW HIC MTX TSV TXT	Juliane Glaser	Mar 15, 2025
GSE223475	RPB7/CTDP1 stabilizes and licenses Pol II termination to reinitiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	127	BW HIC	Xiong Ji	Feb 05, 2025
GSE269258	HoxBlinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	61	BED BIGWIG BW HIC MTX NARROWPEAK TABULAR TSV	Suming Huang	Jan 31, 2025
GSE241741	Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	96	BW HIC	Xiang Qiu	Jan 22, 2025
GSE247946	Regulation of transcriptional signal integration and memory by inflammation-induced chromosome conformation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	132	BW HIC	Andy Chen	Dec 31, 2024
GSE242903	An Intrinsically Disordered Region Controlling Condensation of a Circadian Clock Component and Rhythmic Transcription in the Liver	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	65	BW HIC TXT	KUN ZHU	Nov 05, 2024
GSE270094	TCF1 dosage determines cell fate during T cell development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	4	HIC	Supriyo De	Oct 18, 2024
GSE275759	TCF1 dosage determines cell fate during T cell development.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	12	H5 HIC	Supriyo De	Oct 17, 2024
GSE255733	SRF promotes long-range chromatin loop formation and stem cell pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	30	BW H5 HIC	Pavel Tsaytler	Oct 09, 2024
GSE266349	Remodeling of Il4-Il13-Il5 locus underlies selective gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	138	BED BW HIC	Hiroyuki Nagashima	Sep 25, 2024
GSE200114	Dynamic promoter-enhancer contacts contribute to spatiotemporal gene expression during mouse fetal development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	70	BEDPE BIGWIG HIC NARROWPEAK	Ming Hu	Sep 02, 2024
GSE246859	ChromaFold predicts the 3D contact map from single-cell chromatin accessibility	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	3	HIC TSV	Christina Leslie	Aug 31, 2024
GSE249687	Three-dimensional chromatin architecture in DRG neurons following sciatic nerve injury in WT and Rad21 KO mice.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	52	BED BW HIC RDS TXT	Ilaria Palmisano	Aug 29, 2024
GSE230482	Members of an array of zinc finger proteins specify distinct Hox chromatin boundaries	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	57	BW HIC NARROWPEAK TXT	Danny Reinberg	Aug 21, 2024
GSE249430	Cohesin trajectories shape the epigenetic and transcriptional landscape of clustered Protocadherin genes for single neuron identities	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	80	BEDGRAPH BW H5 HIC	Lea Kiefer	Jul 29, 2024
GSE247620	Histone methyltransferase SETDB1 silenced SINE B2 retrotransposons and maintained mitotic cell cycle of neural progenitor cells	Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	22	COV HIC NARROWPEAK	Yan Jiang	Jun 01, 2024
GSE214692	Dissecting developmental disorders caused by CTCF mutation at R567	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	71	BW CSV HIC MTX NARROWPEAK TSV	gongcheng Hu	May 05, 2024
GSE215181	Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	135	BW H5 HIC TXT	Vijay Nagarajan	May 01, 2024
GSE265888	Loop Stacking Attenuates Chromatin Boundaries in TCR Loci During Thymocyte Development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	85	BED BEDGRAPH BEDPE BROADPEAK BW CSV HIC MATRIX TXT	Hao bingtao	Apr 27, 2024
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024