GEO Browser - GEO

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77 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing			HIC
GSE191146	Deeply hidden genome organization mediated by base-unpairing regions (BURs) directly bound by SATB1 linked to transcription	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BEDGRAPH BW HIC NARROWPEAK	Terumi Kohwi-Shigematsu	Dec 28, 2021
GSE193968	Enhancer-instructed chromatin folding and compartmentalization dictate Vκ repertoire rearrangement to combat bacterial infection	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BIGWIG HIC	Edgar Mauricio Barajas-Mora	Dec 05, 2022
GSE197024	Epigenetic modules governing skin epidermal homeostasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BEDPE HIC TXT	Stephen R Brooks	Jan 13, 2023
GSE198730	Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	BED CSV H5 HIC MTX TBI TSV XLSX	Vittorio Sartorelli	Jul 31, 2022
GSE200114	Dynamic promoter-enhancer contacts contribute to spatiotemporal gene expression during mouse fetal development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	70	BEDPE BIGWIG HIC NARROWPEAK	Ming Hu	Sep 02, 2024
GSE200673	Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	24	BED BW HIC	Pietro Zoppoli	Jul 08, 2022
GSE206556	Epigenetic modules governing skin epidermal homeostasis [III]	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	22	BED BEDPE HIC TXT	Stephen R Brooks	Jan 12, 2023
GSE210289	Igh and Igk loci use different folding principles for V gene recombination due to distinct chromosomal architectures of pro-B and pre-B cells	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	36	BED BEDGRAPH HIC MCOOL TXT	Mortiz M Gaidt	Jan 15, 2023
GSE211904	A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	67	BW HIC TXT	Filippo M. RIJLI	Apr 27, 2023
GSE212455	DNA dioxygenases Tet2/3 control epithelial differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BEDPE HIC	Andrey Sharov	Nov 01, 2022
GSE213501	Enhancer Cis Elements Instruct Promoter-Enhancer Interaction, Promoter-Enhancer Insulation and Compartmental Segregation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	30	BIGWIG HIC MCOOL	Hanbin Lu	Dec 31, 2023
GSE215181	Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	135	BW H5 HIC TXT	Vijay Nagarajan	May 01, 2024
GSE221519	BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BW HIC	Mark Maienschein-Cline	Aug 31, 2023
GSE223475	RPB7/CTDP1 stabilizes and licenses Pol II termination to reinitiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	127	BW HIC	Xiong Ji	Feb 05, 2025
GSE226088	SALL1 enforces microglia-specific DNA binding and function of SMADs to establish microglia identity [3D]	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	10	BEDPE HIC TXT	Christopher Glass	May 01, 2023
GSE226316	TEAD2 mediates the ground-state pluripotency by chromatin looping	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	103	BW HIC TXT	xiaotao dong	Mar 03, 2024
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE228402	Selective compartmentalization in condensin-depleted mitotic chromosomes	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	146	BW COOL HIC	Haoyue Zhang	Nov 22, 2023
GSE228880	RIF1 regulates early replication timing in murine B cells.	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	69	BEDGRAPH BW HIC MCOOL	Tobias Neumann	Jun 13, 2023
GSE230482	Members of an array of zinc finger proteins specify distinct Hox chromatin boundaries	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	57	BW HIC NARROWPEAK TXT	Danny Reinberg	Aug 21, 2024