GEO Browser - GEO

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76 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing			HIC
GSE143293	Histone 1 deficiency drives lymphomagenesis through disruption of 3D chromatin architecture	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	53	HIC MTX TSV TXT SRA Run Selector	Matt Teater	Sep 02, 2020
GSE144834	Balancing cohesin eviction and retention prevents aberrant chromosomal interactions, Polycomb-mediated repression, and X-inactivation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	94	BW HIC TXT SRA Run Selector	Andrea June Kriz	Mar 15, 2021
GSE153402	CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [Hi-C and PLAC-seq]	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	HIC TXT SRA Run Selector	Bing Ren	Jul 06, 2020
GSE153403	CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	88	BW HIC TXT	Bing Ren	Jul 06, 2020
GSE154051	Calcium Signaling Prompts NIPBL Recruitment at Active Enhancers and Promoters via Distinct Mechanisms to Reconstruct Genome Compartmentalization	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	165	BEDGRAPH BW HIC TXT SRA Run Selector	Cornelis Murre	Oct 10, 2020
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE157339	Architectural role of cell-fate-instructive transcription factor MyoD in orchestrating 3D genome organization in muscle cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	122	BEDPE BW H5 HIC TXT XLS	Yong Zhang	May 01, 2021
GSE159468	Hijacking of transcriptional condensates by endogenous retroviruses	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	78	BED BW HIC TAR TSV SRA Run Selector	Sara Hetzel	Mar 30, 2022
GSE162617	Transcription Factors Recruit the Cohesin Loader NIPBL to Promote Chromatin Looping and Long-range Gene Regulation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	11	HIC MCOOL SRA Run Selector	Gordon Hager	Jun 01, 2021
GSE167358	Distal and proximal cis-regulatory elements sense X-dosage and developmental state at the Xist locus	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	164	BW HIC NARROWPEAK	Till Schwämmle	Mar 04, 2021
GSE168524	NEURON-SPECIFIC CHROMOSOMAL MEGADOMAIN ORGANIZATION IS ADAPTIVE TO RECENT RETROTRANSPOSON EXPANSIONS	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus Mus spretus	72	HIC TXT XLS SRA Run Selector	Sandhya Chandrasekaran	Oct 11, 2021
GSE169561	In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BW HIC	Rafael Domínguez Acemel	May 05, 2022
GSE171749	SETDB1/NSD dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	88	BED BROADPEAK BW HIC TXT SRA Run Selector	Amandine BARRAL	Jan 25, 2022
GSE178348	TCF-1 mediates 3D genome reconfiguration during T cell development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	40	BED BW HIC MCOOL TXT	Wenliang Wang	Feb 24, 2022
GSE183675	Tet2 deficiency altered hematopoietic stem and progenitor cells ageing process	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	53	BW CSV HIC TSV TXT SRA Run Selector	Jia Li	Aug 11, 2023
GSE184471	Cell-type differential targeting of Setdb1 prevents aberrant CTCF binding, chromatin looping, and cis-regulatory interactions	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	44	BW HIC NARROWPEAK SRA Run Selector	Lut Fei Tam	Nov 01, 2023
GSE185883	Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (HiChIP)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	HIC SRA Run Selector	Hyoung-Pyo Kim	Jan 04, 2023
GSE185884	Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	92	BED BW HIC RESULTS	Hyoung-Pyo Kim	Jan 04, 2023
GSE186411	Hnrnpk is essential for embryonic limb bud development as a transcription activator and insulator collaborator	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	34	BW HIC TXT SRA Run Selector	Yuyu Chen	Apr 15, 2024
GSE190057	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED HIC MTX TBI TSV TXT	CBDM Lab	Dec 03, 2021