GEO Browser - GEO

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76 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing			HIC
GSE212455	DNA dioxygenases Tet2/3 control epithelial differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BEDPE HIC	Andrey Sharov	Nov 01, 2022
GSE246859	ChromaFold predicts the 3D contact map from single-cell chromatin accessibility	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	3	HIC TSV	Christina Leslie	Aug 31, 2024
GSE270094	TCF1 dosage determines cell fate during T cell development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	4	HIC	Supriyo De	Oct 18, 2024
GSE243851	Nuclear Organization of Lens Epithelium and Fiber Cells in Newborn Lens	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH BEDPE BW HIC NARROWPEAK	William Chang	Oct 16, 2023
GSE185883	Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (HiChIP)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	HIC SRA Run Selector	Hyoung-Pyo Kim	Jan 04, 2023
GSE226088	SALL1 enforces microglia-specific DNA binding and function of SMADs to establish microglia identity [3D]	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	10	BEDPE HIC TXT	Christopher Glass	May 01, 2023
GSE162617	Transcription Factors Recruit the Cohesin Loader NIPBL to Promote Chromatin Looping and Long-range Gene Regulation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	11	HIC MCOOL SRA Run Selector	Gordon Hager	Jun 01, 2021
GSE275759	TCF1 dosage determines cell fate during T cell development.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	12	H5 HIC	Supriyo De	Oct 17, 2024
GSE153402	CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [Hi-C and PLAC-seq]	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	HIC TXT SRA Run Selector	Bing Ren	Jul 06, 2020
GSE190057	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED HIC MTX TBI TSV TXT	CBDM Lab	Dec 03, 2021
GSE206556	Epigenetic modules governing skin epidermal homeostasis [III]	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	22	BED BEDPE HIC TXT	Stephen R Brooks	Jan 12, 2023
GSE247620	Histone methyltransferase SETDB1 silenced SINE B2 retrotransposons and maintained mitotic cell cycle of neural progenitor cells	Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	22	COV HIC NARROWPEAK	Yan Jiang	Jun 01, 2024
GSE125595	RNA interactions are essential for proper CTCF function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	24	BW CLOUPE HIC TXT SRA Run Selector	Ricardo Saldana-Meyer	Sep 12, 2019
GSE200673	Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	24	BED BW HIC	Pietro Zoppoli	Jul 08, 2022
GSE130725	H4K20me3 methyltransferase SUV420H2 shapes the three-dimensional chromatin landscape of pluripotent embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	26	BEDGRAPH HIC TXT	Benjamin L Kidder	Nov 13, 2020
GSE213597	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BW HIC MTX TBI TSV	Kim Nichols	Aug 24, 2023
GSE213501	Enhancer Cis Elements Instruct Promoter-Enhancer Interaction, Promoter-Enhancer Insulation and Compartmental Segregation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	30	BIGWIG HIC MCOOL	Hanbin Lu	Dec 31, 2023
GSE255733	SRF promotes long-range chromatin loop formation and stem cell pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	30	BW H5 HIC	Pavel Tsaytler	Oct 09, 2024
GSE176066	NicE-C efficiently reveals open chromatin associated chromosome interactions at high resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	32	BW HIC SRA Run Selector	Zhengyu Luo	Jan 18, 2022
GSE193968	Enhancer-instructed chromatin folding and compartmentalization dictate Vκ repertoire rearrangement to combat bacterial infection	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BIGWIG HIC	Edgar Mauricio Barajas-Mora	Dec 05, 2022