GEO Browser - GEO

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168 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing			BEDGRAPH
GSE135225	Oct4-mediated inhibition of Lsd1 activity promotes the active and primed state of pluripotency enhancers [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	XLSX BEDGRAPH SRA Run Selector	Humaira Gowher	Jun 29, 2020
GSE135227	Oct4-mediated inhibition of Lsd1 activity promotes the active and primed state of pluripotency enhancers	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	6	XLSX TSV BEDGRAPH	Humaira Gowher	Jun 29, 2020
GSE178852	The Pol II prenitiation complex (PIC) influences Mediator binding but not promoter-enhancer looping	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	212	XLSX TXT BEDGRAPH	Fei Sun	Jul 22, 2021
GSE184884	GPS2 sensitizes IL4 pathway via the recruitments of KDM1A	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	203	XLSX TXT BEDGRAPH SRA Run Selector	Zhiqiang Huang	Dec 14, 2022
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	XLSX COOL BW BIGWIG BEDGRAPH BED	Mariam Okhovat	Oct 20, 2023
GSE207058	BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	XLSX WIG BIGWIG BEDGRAPH	Elena Pugacheva	Jan 03, 2024
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	XLSX TXT TSV TAB NARROWPEAK MTX BW BEDGRAPH BED SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE213460	HNF4a regulates hepatic peroxisomal biogenesis and fatty acid elongation during the thermogenic response	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	64	XLSX BEDGRAPH	Judith Simcox	Apr 14, 2023
GSE242974	The role of SMC3 in heart development by regulating super-enhancer associated genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	35	XLSX XLS TSV MTX BW BEDGRAPH BED	bowen zhang	Sep 14, 2023
GSE252121	Chromatin remodeler CHD8 is required for spermatogonial proliferation and early meiotic progression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	42	XLSX TXT BEDGRAPH	Kenta Nitahara	Dec 31, 2023
GSE137050	The comparative roadmaps of reprogramming and transformation unveiled that cellular plasticity is broadly controlled by Bcl11b and Atoh8	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	59	XLS TXT TSV MTX BEDGRAPH	Fabrice Lavial	May 06, 2022
GSE222490	Genome-wide mapping of H3K4me1 status in primary adipocytes isolated from wild-type (WT) and Lonp1-knockout (LONP1 AKO) mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	XLS BEDGRAPH	Zhenji Gan	Apr 08, 2023
GSE210815	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	147	WIG TXT BEDGRAPH	Xiao Ge	Oct 31, 2023
GSE210817	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	571	WIG FPKM_TRACKING BEDGRAPH	Xiao Ge	Oct 31, 2023
GSE236182	Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	WIG TXT HIC BW BIGWIG BEDPE BEDGRAPH	Sergio Niñerola	Dec 04, 2023
GSE158506	Fat1 deletion promotes hybrid EMT state with enhanced tumor progression, stemness, and metastasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	62	VCF TXT BEDGRAPH	Yura Song	Dec 04, 2020
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	TXT CSV BW BEDGRAPH BED SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE128535	Histone 3 K9 and K27 acetylation of enhancers in response to thyroid hormone	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	56	TXT BEDGRAPH BED SRA Run Selector	Lars Grøntved	Jul 01, 2019
GSE130119	MAFG-driven astrocytes promote CNS inflammation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	163	TXT CSV BEDGRAPH	Michael Wheeler	Feb 12, 2020
GSE130725	H4K20me3 methyltransferase SUV420H2 shapes the three-dimensional chromatin landscape of pluripotent embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	26	TXT HIC BEDGRAPH	Benjamin L Kidder	Nov 13, 2020