GEO Browser - GEO

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827 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing			TXT
GSE219096	Epigenetic profiles of young vs old Vwf+ HSCs at single cell level	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1392	TXT	Claus Nerlov	Feb 22, 2023
GSE90850	Epithelial-Mesenchymal Micro-Niches Govern Stem Cell Lineage Choices	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1130	NARROWPEAK TXT	Hanseul Yang	Apr 18, 2017
GSE80483	A multi-step transcriptional and chromatin cascade underlies motor neuron programming	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	887	BW TXT	Shaun Mahony	Dec 07, 2016
GSE183556	MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	550	BEDPE TXT	Asifa Akhtar	Aug 10, 2023
GSE231719	Light-Assisted Single-Stranded DNA Open-Chromatin Analysis in Single Spatially Localized Neuronal Cells Identifies the Capacity of Endogenous DNA to Act Catalytically [CHEX-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	417	BED MTX TXT	Junhyong Kim	Oct 19, 2023
GSE115970	Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	415	TXT SRA Run Selector	Zhana Duren	Jun 19, 2018
GSE135146	NFI Transcription Factors Govern Stem Cell Chromatin Accessibility and Guard Against Irreversible Hair Loss	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	410	TDF TXT	Hanseul Yang	Apr 01, 2020
GSE128186	MeCP2 represses the rate of transcriptional initiation of highly methylated long genes	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	400	RCC TXT	Lisa D. Boxer	Nov 26, 2019
GSE159630	Mechanisms underlying divergent responses of genetically distinct macrophages to IL-4	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	380	TXT	Christopher K Glass	Jun 18, 2021
GSE204988	Recycling of H2A-H2B provides short-term memory of chromatin states	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	366	BW TXT	Anja Groth	Feb 06, 2023
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE175965	An NPAS4:NuA4 complex couples synaptic activity to DNA repair	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	320	BIGWIG H5 TXT	ELIZABETH POLLINA	Dec 16, 2022
GSE223578	Dynamic DNA methylation turnover at the exit of pluripotency epigenetically primes gene regulatory elements for hematopoietic lineage specification	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	299	TXT	Simon Richard Andrews	Jan 24, 2023
GSE109965	Analysis of genetically diverse macrophages reveals local and domain-wide mechanisms that control transcription factor binding and function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	294	TXT SRA Run Selector	Christopher Glass	May 17, 2018
GSE172335	Nucleotide depletion promotes cell fate transitions by inducing DNA replication stress	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	284	BW CSV MTX TXT	Brian Do	May 04, 2024
GSE159627	Mechanisms underlying divergent responses of genetically distinct macrophages to IL-4 [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	267	TXT SRA Run Selector	Christopher K Glass	Jun 19, 2021
GSE89362	Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	265	TXT SRA Run Selector	Camden Jansen	Feb 14, 2019
GSE193728	Characterization of sequence determinants of enhancer function using natural genetic variation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	264	BW TXT	Marty G Yang	Jan 17, 2022
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	244	TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023