GEO Browser - GEO

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342 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing			NARROWPEAK
GSE194018	A role for the GATA transcription factor family in X-chromosome inactivation as direct potent Xist activators	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Synthetic plasmid Mus musculus	39	BW NARROWPEAK	Till Schwämmle	Jan 26, 2022
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE167358	Distal and proximal cis-regulatory elements sense X-dosage and developmental state at the Xist locus	Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	164	BW HIC NARROWPEAK	Till Schwämmle	Mar 04, 2021
GSE129380	An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Sarcophilus harrisii Mus musculus Homo sapiens	24	BROADPEAK NARROWPEAK SRA Run Selector	Mark Dawson	Sep 28, 2019
GSE129382	An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Sarcophilus harrisii Mus musculus Homo sapiens	54	BROADPEAK NARROWPEAK	Mark Dawson	Sep 28, 2019
GSE222040	Synthetic reversed sequence reveals default chromatin states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	112	BW NARROWPEAK	Brendan R. Camellato	Dec 30, 2023
GSE252482	Synthetic reversed sequences reveal default genomic states	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	160	BW NARROWPEAK	Brendan R. Camellato	Jan 16, 2024
GSE71156	Allele-specific ATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BW NARROWPEAK TXT SRA Run Selector	Howard Chang	Jun 30, 2016
GSE73692	Genome-wide mapping of PRDM15 binding in pluripotent mouse Embryonic Stem Cells (mESCs)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	BED BW NARROWPEAK SRA Run Selector	Jingxian Zhang	Jul 24, 2017
GSE73694	PRDM15 safeguards naïve pluripotency by transcriptionally regulating WNT and MAPK/ERK signaling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	29	BW NARROWPEAK	Jingxian Zhang	Jul 24, 2017
GSE75188	Ezh2 and Runx1 Mutations Targeted to Early Lymphoid Progenitors Collaborate to Promote Early Thymic Progenitor Leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	29	BROADPEAK NARROWPEAK	Adam Mead	Feb 12, 2018
GSE76478	Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	NARROWPEAK SRA Run Selector	Elzo de Wit	Mar 01, 2016
GSE76481	Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Mus musculus	85	NARROWPEAK TXT	Elzo de Wit	Mar 01, 2016
GSE76927	ChIP-seq analysis of E2f4, H3K4me2 and H3K27ac in the mouse livers	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BIGWIG BROADPEAK NARROWPEAK SRA Run Selector	Xuxu Sun	Mar 30, 2016
GSE76935	Suppression of SWI/SNF component Arid1a promotes mammalian regeneration through chromatin remodeling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BIGWIG BROADPEAK NARROWPEAK XLS	Xuxu Sun	Mar 30, 2016
GSE81203	Polarized regulatory landscape and Wnt responsiveness underlie Hox activation in embryos	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	65	BEDGRAPH BW NARROWPEAK WIG SRA Run Selector	Jacqueline Deschamps	Sep 16, 2016
GSE85185	YY1 and CTCF Orchestrate a 3D Chromatin Looping Switch during Early Neural Lineage Commitment	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED NARROWPEAK TXT SRA Run Selector	Jennifer E Phillips-Cremins	May 22, 2017
GSE90850	Epithelial-Mesenchymal Micro-Niches Govern Stem Cell Lineage Choices	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1130	NARROWPEAK TXT	Hanseul Yang	Apr 18, 2017
GSE91021	The Sin3a/HDAC co-repressor complex cooperates with Nanog in promoting stem cell pluripotency and somatic cell reprogramming [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	NARROWPEAK SRA Run Selector	Jianlong Wang	Feb 21, 2017
GSE93431	Two independent modes of chromosome organization are revealed by cohesin removal	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	32	BW CSV HDF5 NARROWPEAK TSV TXT SRA Run Selector	Nezar Abdennur	Jun 10, 2017