GEO Browser - GEO

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609 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing			BED
GSE240030	ATRX guards against aberrant differentiation in mesenchymal progenitor cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	165	BED BW NARROWPEAK	Douglas Barrows	Mar 13, 2024
GSE235977	Differential genome-wide profile of RBPJ, H3K4me1 and H3K4me3 as well as differential chromatin accessibility upon treatment with gamma-secretase inibithor (GSI) DAPT (ATAC-Seq).	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED BW	Tobias Friedrich	Mar 24, 2024
GSE235981	Differential genome-wide profile of RBPJ, H3K4me1 and H3K4me3 as well as differential chromatin accessibility upon treatment with gamma-secretase inibithor (GSI) DAPT (ChIP-Seq).	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	BED BW	Tobias Friedrich	Mar 24, 2024
GSE156293	LaminB1 ChIP-seq of DP thymocytes from wildtype and Suv39h1 and Suv39h2 double knockout mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED SRA Run Selector	Gordon K Smyth	Mar 27, 2024
GSE262601	Individual transcription factors modulate both the micromovement of chromatin and its long-range structure [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BED BW	David Michael Suter	Apr 01, 2024
GSE240484	AgRP neuron epigenomes across hunger states reveal that IRF3 mediates leptin's effects	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BW NARROWPEAK TSV	NORC Boston	Apr 12, 2024
GSE188524	A critical requirement for IκBα in controlling dormancy in Hematopoietic stem cells via retinoic acid during embryonic development [Cut&Tag]	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED BW SRA Run Selector	Anna Bigas	Apr 15, 2024
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE239638	Cancer-associated Histone H3 N-terminal arginine mutations disrupt PRC2 activity and impair differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	79	BED BW MTX TSV	Benjamin Alexander Nacev	Apr 29, 2024
GSE243509	TRPS1 maintains luminal progenitors in the mammary gland by repressing SRF/MRTF activity [03_scatac_shTRPS1_organoids]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED MTX TSV	Bjoern von Eyss	May 24, 2024
GSE243511	TRPS1 maintains luminal progenitors in the mammary gland by repressing SRF/MRTF activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	65	BED BW MTX TSV	Bjoern von Eyss	May 24, 2024
GSE256232	Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	BED BIGWIG	Ruitu Lyu	Jun 20, 2024
GSE256229	Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq [Mouse KAS-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BED BIGWIG	Ruitu Lyu	Jun 21, 2024
GSE232925	The primitive endoderm supports lineage plasticity to enable regulative development [CUT&Tag]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	39	BED BW	Josh M Brickman	Jun 25, 2024
GSE232926	The primitive endoderm supports lineage plasticity to enable regulative development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	47	BED BW TAR	Josh M Brickman	Jun 25, 2024
GSE267201	The primitive endoderm supports lineage plasticity to enable regulative development [CUT&Tag H3K4me3]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED BW	Josh M Brickman	Jun 25, 2024
GSE154447	The Retinal Determination Gene Network can confer chemoresistant properties to AML	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	28	BED CSV TXT WIG SRA Run Selector	Georges Lacaud	Jul 01, 2024
GSE209627	Genomic binding of NF-Y in mouse and human cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BIGWIG	Diletta Dolfini	Aug 01, 2024
GSE213503	Benchmarking Bulk and Single-cell Variant Calling Approaches on Chromium scRNA-seq and scATAC-seq Libraries	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BED MTX TSV	Tully Michael Underhill	Aug 05, 2024