GEO Browser - GEO

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70 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Genome binding/occupancy profiling by high throughput sequencing			SRA Run Selector
GSE50776	c-Jun impedes somatic cell reprogramming by activating mesenchymal core regulators and suppressing pluripotent ones	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	TXT XLS SRA Run Selector	Lihui Lin	Jun 10, 2015
GSE71863	Whole genome nucleosome positioning by MNase-Seq on the mouse tumor line, RMA	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED SRA Run Selector	Andrew Makrigiannis	Apr 28, 2016
GSE140975	Wapl repression by Pax5 promotes loop extrusion and V gene recombination at the Igh locus	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	170	BED BEDGRAPH BW HIC TXT SRA Run Selector	Joris van der Veeken	Jul 01, 2020
GSE62151	Upstream Anti-sense Promoters Act as Local Enhancers of Mammalian Protein-coding Genes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	17	BEDGRAPH BW WIG SRA Run Selector	Karen Adelman	Jun 23, 2015
GSE140313	Trib1 promotes acute myeloid leukemia progression by modulating transcriptional programs of Hoxa9 [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	TDF SRA Run Selector	Takuro Nakamura	Oct 21, 2020
GSE116784	Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BEDGRAPH SRA Run Selector	Shinichiro Chuma	Feb 06, 2020
GSE139677	Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice [ChIP-seq II]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDGRAPH SRA Run Selector	Shinichiro Chuma	Feb 06, 2020
GSE97866	Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BW SRA Run Selector	Jelena M Telenius	Jun 14, 2017
GSE150644	The stem cell pluripotency genes Klf4 and Oct4 regulate complex SMC phenotypic changes critical in late-stage atherosclerotic lesion pathogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	22	NARROWPEAK TXT SRA Run Selector	Gary K Owens	Jul 23, 2020
GSE104098	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture [ChIP-Seq 2]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED BW SRA Run Selector	Bo Wen	Dec 03, 2017
GSE95113	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture [ChIP-Seq 1]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED BW SRA Run Selector	Bo Wen	Dec 03, 2017
GSE134303	The intestinal microbiota programs diurnal rhythms in host metabolism through histone deacetylase 3	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	70	TXT SRA Run Selector	Zheng Kuang	Sep 26, 2019
GSE95826	Tcrd rearrangement redirects a processive Tcra recombination program to expand the Tcra repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BEDGRAPH TXT SRA Run Selector	Zachary Carico	Jun 06, 2017
GSE80105	Synergistic model of chromatin predicts Dnase-I accessibility	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TAR TSV TXT SRA Run Selector	David Gifford	Jul 20, 2016
GSE92590	Simultaneous transcriptional and epigenomic profiling from specific cell types within heterogeneous tissues in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BW SRA Run Selector	Evan Rosen	Jan 24, 2017
GSE178230	Screening thousands of transcribed coding and non-coding regions reveals sequence determinants of RNA polymerase II elongation potential.	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	58	BEDGRAPH BW FA TXT SRA Run Selector	Hanneke Vlaming	Apr 06, 2022
GSE73225	SOX9 modulates the expression of key transcription factors required for heart valve development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	5	BED TXT SRA Run Selector	Pamela A. Hoodless	Nov 05, 2015
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE122450	Parkinson-associated SNCA enhancer variants revealed by open chromatin in mouse dopamine neurons	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	15	TXT SRA Run Selector	Andy McCallion	Nov 14, 2018
GSE46748	Obesity, rather than diet, drives epigenomic alterations in colonic epithelium resembling cancer progression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BEDGRAPH SRA Run Selector	ruifang li	Jan 16, 2014