GEO Browser - GEO

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63 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Genome binding/occupancy profiling by high throughput sequencing			BW
GSE159503	Effects of sheared chromatin length on ChIP-seq quality and sensitivity	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	65	BROADPEAK BW XLSX SRA Run Selector	Ross Hardison	Oct 14, 2020
GSE67516	A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	42	BED BW TXT XLS XLSX SRA Run Selector	John Edward Froberg	Jun 19, 2015
GSE82255	Destabilization of B2 RNA by EZH2 activates the stress response	Other Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	61	BED BW TXT SRA Run Selector	Athanasios Zovoilis	Dec 19, 2016
GSE95116	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	28	BW HIC TXT	Bo Wen	Dec 03, 2017
GSE97669	Promoter of lncRNA gene PVT1 is a tumor suppressor DNA element	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	267	BW NARROWPEAK TXT	Howard Y. Chang	May 31, 2018
GSE97871	Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	88	BW WIG	Jelena M Telenius	Jun 14, 2017
GSE110604	Characterization of tissue-specific BMAL1 cistromes reveals new roles for enhancer-enhancer interactions in regulating rhythmic transcription	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BED BW	Jerome Menet	May 08, 2018
GSE116208	TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer	Other Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	83	BW	Anjana Rao	Apr 29, 2019
GSE116649	Megadomains and superloops form dynamically during X-chromosome inactivation but are dispensable for silencing and escape	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	65	BED BEDGRAPH BW HIC XLS XLSX SRA Run Selector	John Edward Froberg	Oct 31, 2018
GSE121355	A pliable mediator acts as a functional, rather than an architectural bridge, between promoters and enhancers	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	201	BEDGRAPH BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 01, 2019
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE126264	Bcor loss perturbs myeloid differentiation and promotes leukaemogenesis	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	47	BW NARROWPEAK TDF	Madison Kelly	Feb 07, 2019
GSE129529	Topoisomerase II-induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	73	BW TXT	Yaakov Maman	Apr 24, 2019
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Other Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Other Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE131690	H3K36 methyltransferase SETD2 regulates NHEJ during lymphoid and neural development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	68	BW TXT	Richard Koche	Mar 23, 2020
GSE140677	Intra-Vk Cluster Recombination Shapes the Ig Kappa Locus Repertoire	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	69	BW	Yaakov Maman	Jan 01, 2020
GSE140975	Wapl repression by Pax5 promotes loop extrusion and V gene recombination at the Igh locus	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	170	BED BEDGRAPH BW HIC TXT SRA Run Selector	Mortiz M Gaidt	Jul 01, 2020
GSE142315	Induction of Recurrent Break Cluster Genes in Neural Progenitor Cells Differentiated from Embryonic Stem Cells In Culture	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	116	BW	Frederick W Alt	Jan 11, 2020
GSE142781	CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	170	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	May 11, 2020