GEO Browser - GEO

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54 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Genome binding/occupancy profiling by high throughput sequencing			BED
GSE82255	Destabilization of B2 RNA by EZH2 activates the stress response	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	61	BED BW TXT SRA Run Selector	Athanasios Zovoilis	Dec 19, 2016
GSE242974	The role of SMC3 in heart development by regulating super-enhancer associated genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	35	BED BEDGRAPH BW MTX TSV XLS XLSX	bowen zhang	Sep 14, 2023
GSE61247	ChIP-seq profiling of loci bound by HIF1a in wild-type E12.5 hearts	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED SRA Run Selector	Alexander C Zambon	Apr 29, 2015
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE72897	EWS-FLI1-induced osteosarcoma model unveiled a crucial role of impaired osteogenic differentiation on osteosarcoma development [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED SRA Run Selector	Yasuhiro Yamada	Mar 01, 2016
GSE72898	EWS-FLI1-induced osteosarcoma model unveiled a crucial role of impaired osteogenic differentiation on osteosarcoma development	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CEL	Yasuhiro Yamada	Mar 01, 2016
GSE95113	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture [ChIP-Seq 1]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED BW SRA Run Selector	Bo Wen	Dec 03, 2017
GSE104098	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture [ChIP-Seq 2]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED BW SRA Run Selector	Bo Wen	Dec 03, 2017
GSE49137	INO80 complex in the core regulatory network governing ESC self-renewal [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED BW SRA Run Selector	Li Wang	May 16, 2014
GSE166123	Epigenetic dysregulation impairs high-fidelity DNA repair to promote cerebellar degeneration in spinocerebellar ataxia type 7	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED BIGWIG TXT	Pawel Michal Switonski	Feb 04, 2021
GSE103543	Internally Calibrated ChIP-seq (ICeChIP-seq) using a large panel of antibodies against H3K4 methylations to measure genome-wide histone modification density in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	25	BED BEDGRAPH BIGWIG FA TXT SRA Run Selector	Rohan Nishant Shah	Sep 20, 2018
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE107641	Klf4 has an unexpected protective role in perivascular cells within the microvasculature	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED SRA Run Selector	Gary K Owens	Dec 01, 2020
GSE184490	Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	132	BED BEDGRAPH TXT SRA Run Selector	Dominic Owens	Dec 16, 2021
GSE54863	FIREWACh: High-throughput Functional Detection of Transcriptional Regulatory Modules in Mammalian Cells	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED SRA Run Selector	Matthew Murtha	Mar 22, 2014
GSE275427	Functional maps of a genomic locus reveal confinement of an enhancer by its target gene	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1057	BED BW MCOOL NARROWPEAK	Christina J.I. Moene	Aug 21, 2024
GSE110604	Characterization of tissue-specific BMAL1 cistromes reveals new roles for enhancer-enhancer interactions in regulating rhythmic transcription	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BED BW	Jerome Menet	May 08, 2018
GSE71863	Whole genome nucleosome positioning by MNase-Seq on the mouse tumor line, RMA	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED SRA Run Selector	Andrew Makrigiannis	Apr 28, 2016
GSE260914	ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	78	BED BW HIC MCOOL TSV TXT	Mikhail Magnitov	Mar 08, 2024