GEO Browser - GEO

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165 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Genome binding/occupancy profiling by high throughput sequencing
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE147568	A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	101	BW TXT	Daniel Holoch	Aug 19, 2021
GSE67516	A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED BW TXT XLS XLSX SRA Run Selector	John Edward Froberg	Jun 19, 2015
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE109545	A novel role of Tet1/2 proteins in cell cycle progression of trophoblast stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	15	BED COV CSV SRA Run Selector	Myriam Hemberger	May 02, 2018
GSE121355	A pliable mediator acts as a functional, rather than an architectural bridge, between promoters and enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	201	BEDGRAPH BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 01, 2019
GSE107675	A tissue-specific self-interacting chromatin domain forms independently of enhancer-promoter interactions	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	TXT SRA Run Selector	Jelena M Telenius	Apr 04, 2021
GSE89698	A transposon sensor during epigenetic reprogramming consists of pervasive transcription and endosiRNAs in mouse ES cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	189	TXT	Felix Krueger	Nov 01, 2017
GSE189163	ASPSCR1-TFE3 orchestrates the angiogenic program of alveolar soft part sarcoma [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	31	TDF SRA Run Selector	Takuro Nakamura	Jan 16, 2023
GSE162609	ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	185	BEDPE BW WIG	Jinxiu Li	Jan 01, 2023
GSE162476	ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [mASPS_ChIP, ASPL_VCP_Pol2]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BW WIG SRA Run Selector	Jinxiu Li	Jan 01, 2023
GSE202791	ATAC-seq Optimization for Cancer Cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	6	BED BIGWIG	Archana Dhasarathy	May 14, 2022
GSE86788	Actively translating transcriptome (Ribotag) profiling of mouse retinal endothelial cells during postnatal development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	TXT XLSX SRA Run Selector	Hyun-Woo Jeong	Sep 26, 2017
GSE214438	Age-associated chromatin re-organization in progenitor B cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	76	BED BEDPE TXT	Yaqiang Cao	Mar 01, 2024
GSE92654	Aire, guardian of immunological tolerance, binds to and activates super-enhancers	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	51	BIGWIG CEL	CBDM Lab	Jan 22, 2017
GSE92597	Aire, guardian of immunological tolerance, binds to and activates super-enhancers [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BIGWIG SRA Run Selector	CBDM Lab	Jan 22, 2017
GSE173403	Allele-specific differential regulation of monoallelically expressed autosomal genes in the cardiac lineage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED CSV	Gayan Indhu Balasooriya	Aug 22, 2022
GSE195876	Allele-specific differential regulation of monoallelically expressed autosomal genes in the cardiac lineage [CUT&Tag]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED CSV	Gayan Indhu Balasooriya	Aug 22, 2022
GSE143271	An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	49	BED BROADPEAK BW TSV	Ross Hardison	Jan 08, 2020
GSE143266	An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BROADPEAK BW SRA Run Selector	Ross Hardison	Jan 09, 2020