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50 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome variation profiling by high throughput sequencing	Mus musculus		TXT
GSE29184	A draft map of cis-regulatory sequences in the mouse genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	143	BAM BIGWIG BOWTIE TXT	Bing Ren	Jul 01, 2012
GSE22657	High-throughput semi-quantitative analysis of insertional mutations in heterogeneous tumors	Genome variation profiling by high throughput sequencing	Mus musculus	453	BED TXT SRA Run Selector	Jos Jonkers	Aug 12, 2011
GSE36203	Architectural protein subclasses shape 3-D organization of genomes during lineage commitment	Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED TXT SRA Run Selector	Jennifer Elizabeth Phillips-Cremins	May 24, 2013
GSE81233	Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	673	BED FPKM_TRACKING TXT SRA Run Selector	Hongshan Guo	Dec 19, 2017
GSE87424	Enhancer Remodeling During Adaptive Bypass to MEK Inhibition Is Attenuated by Pharmacological Targeting of the P-TEFb Complex	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	167	BED CSV IDAT TXT XLSX	Gary L Johnson	Jan 20, 2017
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE145921	Genomic and transcriptomic analysis of medulloblastoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	33	BED BW CSV TXT SRA Run Selector	Zaili Luo	Dec 31, 2021
GSE209815	Characterization of a strain-specific Cd1 reference genome reveals potential inter- and intra-strain functional variability [gDNA]	Genome variation profiling by high throughput sequencing	Mus musculus	5	BED FA GTF TXT VCF	Isaac Jacob Kremsky	Jun 08, 2023
GSE214438	Age-associated chromatin re-organization in progenitor B cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	76	BED BEDPE TXT	Yaqiang Cao	Mar 01, 2024
GSE217482	Immunoediting instructs tumor metabolic reprogramming to support immune evasion	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	45	BED BIGWIG TXT VCF	Ping-Chih Ho	Nov 15, 2022
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE171127	Comparative parallel meta-analysis of cells undergoing reprogramming to pluripotency and trophectoderm states	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	184	BETA BIGWIG MTX TSV TXT SRA Run Selector	Tommy Kaplan	Apr 28, 2022
GSE131366	Distinct Contribution of DNA Methylation and Histone Acetylation to the Genomic Occupancy of Transcription Factors	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	126	BW TXT SRA Run Selector	Skirmantas Kriaucionis	Aug 06, 2020
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE62952	Integrated genome and transcriptome sequencing from the same cell	Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	20	CSV TXT SRA Run Selector	Lennart Kester	Dec 11, 2014
GSE148482	Stimulation of oncogene-specific tumor infiltrating T-cells through combined vaccine and alpha-PD1 enable sustained anti-tumor responses against established HER2 breast cancer (BC)	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	70	CSV TSV TXT VCF	Zachary Conrad Hartman	Apr 11, 2020
GSE161423	Divergent resistance mechanisms to HER2-targeted therapies in breast cancer	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	64	CSV TXT	Kornelia Polyak	Apr 21, 2021
GSE229212	Development of a ß-Globin Gene Replacement Strategy as a Therapeutic Approach for ß-Hemoglobinopathies	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	69	CSV TXT VCF	Kristen Seim	Apr 01, 2024
GSE279236	Concomitant loss of TET2 and TET3 results in T cell expansion and genomic instability	Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	31	TAB TXT	Tarmo Äijö	Nov 06, 2024
GSE92966	The role of Lgr5 intestinal cancer stem cells in tumour initiation, progression and metastasis	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Mus musculus	48	TSV TXT VCF	Robert Piskol	Mar 29, 2017