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667 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens		HIC
GSE71831	Deletion of DXZ4 on the human inactive X chromosome eliminates superdomains and impairs gene silencing	Expression profiling by high throughput sequencing Other	Homo sapiens Macaca mulatta Mus musculus	101	HIC PDF TSV TXT SRA Run Selector	Miriam Huntley	Jul 19, 2016
GSE98119	The energetics and physiological impact of cohesin extrusion	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE103477	Transcription elongation regulates genome 3D structure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	253	BED BEDGRAPH HIC TXT SRA Run Selector	Christopher Benner	Aug 23, 2018
GSE104334	Cohesin loss eliminates all loop domains	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	132	BW HIC TDF	Suhas Rao	Oct 05, 2017
GSE104579	DNA methylation state is associated with the formation of loops and links in hematopoietic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	18	BED BW HIC	Jianzhong Su	Nov 24, 2017
GSE107447	Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	100	BED BW CSV HIC TXT	Yotam Drier	Oct 16, 2019
GSE108869	An alternative CTCF isoform antagonizes canonical CTCF occupancy and changes chromatin architecture to promote apoptosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	BW HIC NARROWPEAK TSV SRA Run Selector	Dipanjan Chowdhury	Jan 12, 2019
GSE109924	TAD cliques shape the 4-dimensional genome during dual lineage terminal differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	34	BED BW FPKM_TRACKING HIC SRA Run Selector	Philippe Collas	Feb 23, 2019
GSE110761	Chromatin Capture Identifies SCARB1-LAG3 Proinflammatory Cardiovascular Disease Gene Networks	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	31	HIC	Annabelle Rodriguez	Oct 04, 2019
GSE111537	Chronic loss of STAG2 leads to altered chromatin structure contributing to deregulated transcription in AML	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	22	BW HIC SRA Run Selector	Ken Mills	Mar 31, 2020
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE115862	Antisense lncRNA transcription mediates DNA demethylation to drive stochastic Protocadherin α promoter choice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	72	BW HIC SRA Run Selector	Daniele Canzio	Apr 15, 2019
GSE116862	Chromatin structure dynamics during human cardiomyocyte differention reveals a role of HERV-H in demarcating TAD boundaries.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT SRA Run Selector	Bing Ren	Jul 09, 2019
GSE116876	Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	87	BED BW HIC TXT	YEQIAO ZHOU	Feb 27, 2019
GSE117888	Role of GR in protection of podocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	16	BEDGRAPH BROADPEAK GTF HIC NARROWPEAK SRA Run Selector	Jingping Yang	May 23, 2021
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE118725	Systematic Analysis of Transcription Factors Binding to Noncoding Variants	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens synthetic construct	11359	BW HIC NARROWPEAK TSV TXT VCF SRA Run Selector	Yunjiang Qiu	Oct 28, 2020
GSE118912	Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	46	HIC TDF TXT	Jesse Engreitz	Oct 21, 2019
GSE120771	Selective Disruption of Core Regulatory Transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	109	BED HIC TXT	Xinyu Wen	May 31, 2019
GSE121355	A pliable mediator acts as a functional, rather than an architectural bridge, between promoters and enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	201	BEDGRAPH BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 01, 2019