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113938 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens
GSE280482	High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops (SDS test)	Other	Homo sapiens	71	3DG BW HIC MCOOL TXT	Xiaoliang Sunney Xie	Feb 28, 2025
GSE281150	High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops	Other	Homo sapiens	829	3DG BW HIC MCOOL PAIRS TAR TXT	Xiaoliang Sunney Xie	Feb 28, 2025
GSE283501	Plasma proteomics and organ dysfunction in COVID-19 ARDS	Protein profiling by protein array	Homo sapiens	66	ADAT TXT	Joseph S Bednash	Apr 09, 2025
GSE25840	Widespread RNA and DNA Sequence Differences in the Human Genome	Third-party reanalysis Expression profiling by high throughput sequencing	Homo sapiens		BAI BAM	Mingyao Li	May 19, 2011
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24	BAI BAM BIGBED BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE33838	DUX4 activates germline genes, retroelements and immune-mediators: Implications for facioscapulohumeral dystrophy	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BAI BAM BEDGRAPH CSV SRA Run Selector	Stephen Tapscott	Jan 03, 2012
GSE65191	Nucleosome locations in human oral keratinocytes	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BAI BAM SRA Run Selector	Guy Lyons	Dec 31, 2017
GSE103693	The Identification and Characterization of Sindbis Virus RNA:Host Protein Interactions	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BAI BAM XLSX SRA Run Selector	Kevin J Sokoloski	Jan 02, 2018
GSE147440	Identification of m6A residues at single nucleotide resolution using eCLIP and an accessible custom analysis pipeline	Expression profiling by high throughput sequencing	Homo sapiens	17	BAI BAM BED XLS SRA Run Selector	Justin Roberts	Dec 31, 2020
GSE209747	Identification and Characterization of a MAPT-targeting Locked Nucleic Acid Antisense Oligonucleotide Therapeutic for Tauopathies III	Expression profiling by high throughput sequencing	Homo sapiens	1	BAI BAM	Amy Easton	Aug 07, 2022
GSE212109	Epigenetic regulation of profibrotic macrophages in systemic sclerosis- associated interstitial lung disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	BAI BED CSV H5 TBI TSV	Tracy Tabib	Sep 02, 2022
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17312	BI Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	633	BAM BED CEL WIG SRA Run Selector	BROAD INSTITUTE	Aug 05, 2009
GSE17593	Melanoma short-term cultures and cell lines: expression profiling and CNV analyses	Expression profiling by array Genome variation profiling by SNP array Expression profiling by high throughput sequencing	Homo sapiens	41	BAM CEL	Michael Berger	Feb 01, 2010
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE20156	RNA-Seq of melanoma short-term cultures and cell lines	Expression profiling by high throughput sequencing	Homo sapiens	14	BAM SRA Run Selector	Michael Berger	Feb 04, 2010
GSE21714	Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM GFF SRA Run Selector	Gareth Wilson	Jan 01, 2011
GSE21823	Nucleosome map of the IMR90 fibroblast cell line	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	BAM SRA Run Selector	Benjamin Berman	Apr 01, 2011
GSE24565	Small RNA-seq from ENCODE/Cold Spring Harbor Lab	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	87	BAM BEDRNAELEMENTS BIGWIG GTF PDF TXT SRA Run Selector	ENCODE DCC	Oct 08, 2010