GEO Browser - GEO

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60 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Gallus gallus		BED
GSE44690	An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Gallus gallus Mus musculus	56	BED	Christian Roy	Mar 26, 2013
GSE44799	Distinct Global Shifts in Genomic Binding Profiles of Limb Malformation Associated HOXD13 Mutations	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	13	BED TXT SRA Run Selector	Peter Hansen	Aug 19, 2013
GSE115563	Similarities and differences in the regulation of HoxD genes during chick and mouse limb development.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	64	BED BEDGRAPH TXT	Nayuta Yakushiji-Kaminatsui	Nov 27, 2018
GSE121527	Reconstruction of the global neural crest gene regulatory network in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus	213	BED MTX TSV TXT	Tatjana Sauka-Spengler	Oct 09, 2019
GSE128818	Aberrant phase separation of transcription factors in human developmental disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Gallus gallus Mus musculus	19	BED BW MTX TSV SRA Run Selector	Denes Hnisz	May 07, 2020
GSE131688	Reconstruction of the global neural crest gene regulatory network in vivo [single cell]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	2	BED MTX TSV SRA Run Selector	Tatjana Sauka-Spengler	Oct 09, 2019
GSE136776	Attenuated FGF signaling underlies the forelimb heterochrony in the emu Dromaius novaehollandiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Dromaius novaehollandiae Gallus gallus	58	BED BEDGRAPH	John Young	Sep 30, 2019
GSE158430	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	334	BED TXT	Colin Kern	Sep 24, 2020
GSE163961	OCT4-SOX2 dimers reshape the epigenome to promote neural crest multipotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Homo sapiens	98	BED NARROWPEAK	Marcos Simoes-Costa	Sep 02, 2022
GSE166240	Transcriptome-wide N6-methyladenosine modification profiling of long non-coding RNAs and circular RNA during growth of Marek’s disease virus in vitro	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Gallus gallus	12	BED XLSX SRA Run Selector	ZHU Xiaojing Xiaojing ZHU	Apr 28, 2021
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE231492	Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis	Gallus gallus Homo sapiens Mus musculus	14	BED BIGWIG NARROWPEAK	Caroline Tonnerre-Doncarli	Jul 19, 2023
GSE247782	Skin regional specification and higher-order HoxC regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus	42	BED BIGWIG COOL NARROWPEAK	Ya-Chen Liang	Mar 25, 2025
GSE27945	Genome-wide CTCF binding maps in chicken red blood cells	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	2	BED MAP	David Martin	Apr 15, 2011
GSE33541	Marek's Disease Virus Infection Induces Differential Chromatin Marks and Tissue-specific effects in inbred chicken lines	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	8	BED PROBSCOREISLAND TXT SRA Run Selector	Apratim Mitra	Jan 01, 2013
GSE38066	Epigenomic profiling of enhancers identifies orphan nuclear receptors NR2F1 and NR2F2 as novel regulators of human neural crest.	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	4	BED SRA Run Selector	Alvaro Rada	Sep 13, 2012
GSE44588	An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	7	BED SRA Run Selector	Christian Roy	Mar 26, 2013
GSE51846	Clustering of CpG islands constitutes an important determinant of the interphase chromosome 3D organization [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	4	BED SRA Run Selector	Artem V Artemov	Mar 01, 2014
GSE51939	Clustering of CpG islands constitutes an important determinant of the interphase chromosome 3D organization	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus	10	BED BEDGRAPH	Artem V Artemov	Mar 01, 2014
GSE86088	Genome-wide binding of posterior HOXA/D transcription factors reveals subgrouping and association with CTCF [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	40	BED BW SRA Run Selector	Daniel Murad Ibrahim	Dec 31, 2016