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148 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Xenopus tropicalis
GSE4771	Comparison of gene expression in embryos in wich Activin B has been knocked-down and in control embryos	Expression profiling by array	Xenopus laevis Xenopus tropicalis	6	GPR	Joana Maria Ramis Morey	May 04, 2007
GSE4777	Comparison of gene expression in embryos in wich the nodal-related genes have been inhibited and in control embryos	Expression profiling by array	Xenopus laevis Xenopus tropicalis	6	GPR	Joana Maria Ramis Morey	May 05, 2007
GSE4952	Comparison of gene expression in embryos in wich Smicl has been knocked-down and in control embryos	Expression profiling by array	Xenopus laevis Xenopus tropicalis	6	GPR	Clara H.L.A.M.G. Collart	May 30, 2009
GSE12975	Expression of known and predicted genes in tissues of Xenopus tropicalis (frog)	Expression profiling by array	Xenopus tropicalis	20	TXT ZIP	Esther T Chan	Apr 16, 2009
GSE14025	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	4	BED TXT SRA Run Selector	Gert Jan Veenstra	Sep 15, 2009
GSE14952	High-throughput sequencing of small RNAs from Xenopus tropicalis	Non-coding RNA profiling by high throughput sequencing	Xenopus tropicalis	5	SRA Run Selector	Mike Gilchrist	Jul 10, 2009
GSE15556	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Xenopus tropicalis	11	FA	Nelson C Lau	Sep 01, 2009
GSE16852	Genome-Wide Transcriptional Response of Silurana (Xenopus) tropicalis to Infection with the Deadly Chytrid Fungus	Expression profiling by array	Xenopus tropicalis	26	TXT	Matt L Settles	Aug 31, 2009
GSE19173	Xenopus egg small RNA associated with Y12 antibody	Non-coding RNA profiling by high throughput sequencing	Xenopus tropicalis	1	SRA Run Selector	Nicolas Robine	Jan 04, 2010
GSE19413	ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation	Genome binding/occupancy profiling by genome tiling array	Xenopus tropicalis	10	BED BEDGRAPH PAIR TXT ZIP	Gert Jan Veenstra	Dec 17, 2009
GSE21109	Massive decrease of maternal polyA mRNA upon post-ovulatory aging in Xenopus tropicalis	Expression profiling by array	Xenopus tropicalis	4	CEL CHP	Ludger Klein-Hitpass	Mar 29, 2011
GSE21482	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	3	BED TXT SRA Run Selector	Gert Jan Veenstra	Dec 30, 2010
GSE23913	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	Methylation profiling by high throughput sequencing	Xenopus tropicalis	4	BED SRA Run Selector	Ozren Bogdanovic	Jun 23, 2011
GSE27227	Mapping gene expression in two Xenopus: evolutionary constraints and developmental flexibility	Expression profiling by array	Xenopus laevis Xenopus tropicalis	96	TXT	Itai Yanai	Jun 01, 2011
GSE30067	Deep sequencing of small RNAs in the Xenopus tropicalis gastrula	Non-coding RNA profiling by high throughput sequencing	Xenopus tropicalis	2	SRA Run Selector	Juan Larrain	Jun 18, 2011
GSE30146	HEB and E2A function as SMAD/FOXH1 cofactors	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2	BED TXT SRA Run Selector	Se-Jin Yoon	Aug 23, 2011
GSE33360	Discovery of novel microRNAs in rat kidney using microarray analyses	Non-coding RNA profiling by array	Ateles geoffroyi Bos taurus Canis lupus familiaris Danio rerio Equus caballus Gallus gallus Homo sapiens Macaca mulatta Macaca nemestrina Mus musculus Ornithorhynchus anatinus Oryzias latipes Ovis aries Pan paniscus Pan troglodytes Petromyzon marinus Pongo pygmaeus Rattus norvegicus Rhinopithecus bieti Saguinus labiatus Sus scrofa Symphalangus syndactylus Taeniopygia guttata Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis	6	TXT	Fanxue Meng	Nov 02, 2011
GSE35606	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells (miRNA)	Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	4	GPR	Janet M. Young	Apr 02, 2012
GSE35921	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells	Expression profiling by array Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	16	GPR	Janet M. Young	Apr 02, 2012
GSE37452	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	Expression profiling by high throughput sequencing	Xenopus tropicalis	40	TXT SRA Run Selector	Kin Fai Au	May 04, 2012