GEO Browser - GEO

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23 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Xenopus laevis		TSV
GSE73870	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	Expression profiling by high throughput sequencing	Xenopus laevis	18	FA TSV SRA Run Selector	Esther Jane Pearl	Nov 06, 2015
GSE73904	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	Expression profiling by high throughput sequencing	Xenopus laevis	18	FA TSV SRA Run Selector	Esther Jane Pearl	Nov 06, 2015
GSE74470	Transcriptomic Insights into Genetic Diversity of Protein-Coding Genes in X. laevis	Expression profiling by high throughput sequencing	Xenopus laevis	3	TSV TXT VCF SRA Run Selector	Leonid Peshkin	Mar 15, 2017
GSE75164	Sperm is epigenetically programmed to regulate gene transcription in embryo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Xenopus laevis	106	BED BW TSV TXT SRA Run Selector	Charles Bradshaw	Mar 22, 2016
GSE130079	Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown	Expression profiling by high throughput sequencing	Xenopus laevis	6	TSV SRA Run Selector	Emil Karaulanov	Sep 16, 2019
GSE130082	NEIL1 and NEIL2 DNA glycosylases protect neural crest development against mitochondrial oxidative stress	Expression profiling by high throughput sequencing	Mus musculus Xenopus laevis	45	TSV	Emil Karaulanov	Sep 16, 2019
GSE132116	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Expression profiling by high throughput sequencing	Xenopus laevis	25	TSV TXT SRA Run Selector	Martina Brueckner	Jun 04, 2019
GSE132117	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Xenopus laevis	33	TSV	Martina Brueckner	Jun 04, 2019
GSE152902	Optimized design of antisense oligomers for targeted rRNA depletion	Expression profiling by high throughput sequencing	Danio rerio Xenopus laevis	13	TSV SRA Run Selector	Miler T Lee	Jun 28, 2020
GSE154896	Single-cell transcriptomic analysis reveals unique cell types and patterns of gene expression in the frog corneal epithelium.	Expression profiling by high throughput sequencing	Xenopus laevis	1	MTX TSV SRA Run Selector	Sushant Bangru	Jul 21, 2021
GSE158849	Spatio-temporal mRNA tracking in the early zebrafish embryo	Expression profiling by high throughput sequencing	Danio rerio Xenopus laevis Xenopus tropicalis	8	CSV MTX TSV SRA Run Selector	Jan Philipp Junker	Dec 07, 2020
GSE165901	Fibroblast Dedifferentiation as a Determinant of Successful Regeneration	Expression profiling by high throughput sequencing	Ambystoma mexicanum Xenopus laevis	18	MTX TSV SRA Run Selector	Tobias Gerber	May 24, 2021
GSE199254	Transcriptome profiling of cytosol, endoplasmic reticulum (ER), and pellet fraction from the Xenopus laevis oocyte and mature egg	Expression profiling by high throughput sequencing	Xenopus laevis	18	TSV XLSX	Jing Yang	Dec 13, 2022
GSE212518	A comparative study of cellular diversity between the Xenopus pronephric and mouse metanephric nephron	Expression profiling by high throughput sequencing	Xenopus laevis	1	H5 MTX TSV	Mark E. Corkins	Sep 04, 2022
GSE245312	Characterization of regeneration initiating cells during Xenopus laevis tail regeneration [scRNA-Seq]	Expression profiling by high throughput sequencing	Xenopus laevis	1	MTX TSV XLSX	Radek Sindelka	Nov 30, 2023
GSE245313	Characterization of regeneration initiating cells during Xenopus laevis tail regeneration [spatial transcriptomics]	Other	Xenopus laevis	3	CSV JPG JSON MTX PNG TSV XLSX	Radek Sindelka	Nov 30, 2023
GSE245320	Characterization of regeneration initiating cells during Xenopus laevis tail regeneration	Expression profiling by high throughput sequencing Other	Xenopus laevis	63	CSV JPG JSON MTX PNG TSV XLSX	Radek Sindelka	Nov 30, 2023
GSE245780	Embryos Assist Each Other’s Morphogenesis: calcium and ATP signaling mechanisms in collective resistance to teratogens (Stage 25)	Expression profiling by high throughput sequencing	Xenopus laevis	12	TSV XLSX	Megan M Sperry	Dec 02, 2023
GSE245781	Embryos Assist Each Other’s Morphogenesis: calcium and ATP signaling mechanisms in collective resistance to teratogens (Stage 35)	Expression profiling by high throughput sequencing	Xenopus laevis	12	CSV TSV	Megan M Sperry	Dec 02, 2023
GSE246151	Enhanced detection of RNA modifications with high-accuracy nanopore RNA basecalling models	Other	Arabidopsis thaliana Homo sapiens Mus musculus Saccharomyces cerevisiae Xenopus laevis synthetic construct	70	CSV FA FASTA TSV TXT	Gregor Diensthuber	Aug 26, 2024