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3040 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Drosophila melanogaster		TXT
GSE24012	Transcriptional profiling of EJC depletion by RNA-Seq using the SOLiD platform (Applied Biosystems)	Expression profiling by high throughput sequencing	Drosophila melanogaster	6	BAM TXT WIG SRA Run Selector	Hugo Lavoie	Oct 20, 2010
GSE28078	mRNA-Seq of whole flies from Drosophila	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila simulans Drosophila virilis Drosophila yakuba	32	BAM RPKM TXT SRA Run Selector	Brian Oliver	Mar 23, 2011
GSE33595	The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti Drosophila melanogaster	8	BAM TXT SRA Run Selector	Peter Arensburger	Mar 18, 2014
GSE44612	Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila biarmipes Drosophila bipectinata Drosophila elegans Drosophila eugracilis Drosophila ficusphila Drosophila kikkawai Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila rhopaloa Drosophila simulans Drosophila takahashii Drosophila virilis Drosophila yakuba	93	BAM BED RPKM TXT	Brian Oliver	Feb 25, 2013
GSE83305	Stable Binding of the Conserved Transcription Factor Grainy Head to Its Target Genes Throughout Drosophila melanogaster Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	19	BAM BED TXT WIG SRA Run Selector	Melissa M Harrison	Feb 02, 2017
GSE175554	Integrative genome-wide analysis of dopaminergic neuron-specific PARIS expression dissects recognition of multiple PPAR-γ associated gene regulation (TRAP-Seq).	Other	Drosophila melanogaster	10	BAM TXT SRA Run Selector	Karin M Danzer	Aug 02, 2021
GSE17628	Tiling arrays from control and flies without Drosha or Pasha	Expression profiling by genome tiling array	Drosophila melanogaster	1	BAR CEL TXT	Ken Sugino	Aug 31, 2009
GSE17629	Circadian analysis of miRNAs and their targets	Expression profiling by array Expression profiling by genome tiling array	Drosophila melanogaster	28	BAR CEL TXT	Ken Sugino	Aug 31, 2009
GSE26905	Classes_of_Insulator_Binding_Sites	Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster	7	BAR BED CEL GFF3 TXT	DCC modENCODE	Jan 27, 2011
GSE34038	Genome-Wide Yan Chromatin Occupancy in Drosophila Embryos	Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster	8	BAR BED CEL TXT	Ilaria Rebay	Mar 01, 2013
GSE36920	Reshaping of global gene expression networks and sex-biased gene expression by integration of a nascent gene	Genome binding/occupancy profiling by genome tiling array Expression profiling by array Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila simulans Drosophila yakuba	32	BAR CEL TXT	Sidi Chen	May 01, 2012
GSE73827	FOXO regulates RNA interference in Drosophila and protects from RNA virus infection	Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster	5	BAR CEL TXT	Michael Marr	Oct 08, 2015
GSE15292	Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	936	BED BEDGRAPH TXT	Kevin P. White	Mar 20, 2009
GSE18572	Discrete genomic domains exhibit co-occurrence of H3K9me3 and H3K27me3 histone modifications throughout Drosophila	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	49	BED BEDGRAPH TXT	Kevin P. White	Oct 16, 2009
GSE20932	Preferential re-replication of Drosophila heterochromatin	Genome variation profiling by genome tiling array	Drosophila melanogaster	3	BED TXT	David M MacAlpine	Mar 18, 2010
GSE24115	Genome-wide chromatin analysis of wing imaginal discs	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	7	BED TXT WIG SRA Run Selector	Enrique Blanco	Feb 17, 2011
GSE24449	Genome-wide comparative ChIP-seq data of CTCF and RNA-seq data in Drosophila white prepupa on Illumina Genome Analyzer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	21	BED TXT WIG SRA Run Selector	Kevin P. White	Nov 08, 2012
GSE26678	Genome-wide binding of Sd and Yki in imaginal discs	Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster	4	BED CEL TXT WIG	Matthew Slattery	Oct 03, 2012
GSE27078	LID ChIP-Seq in wild type, and H3K4me3 ChIP-Seq in wild type and lid RNAi Drosophila melanogaster	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	10	BED TXT SRA Run Selector	David Rossell	Aug 30, 2012
GSE27269	Identifying targets of DSX with DamID-seq	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	12	BED BEDGRAPH GTF MAP TXT SRA Run Selector	Brian Oliver	Oct 30, 2014