GEO Browser - GEO

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48 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Escherichia coli		TSV
GSE96573	Reduced protein expression in a virus attenuated by codon deoptimization	Expression profiling by high throughput sequencing	Escherichia coli	27	TSV SRA Run Selector	Claus Wilke	Jul 30, 2017
GSE104303	Chaperone saturation mediates translation and protein folding efficiency	Other Expression profiling by high throughput sequencing	Escherichia coli Escherichia coli str. K-12 substr. MG1655	30	TSV SRA Run Selector	Vincent J Hilser	Oct 27, 2024
GSE105112	Structural characterization of ribosome variants	Other	Escherichia coli	12	TSV SRA Run Selector	Boris Zinshteyn	Oct 03, 2018
GSE108727	Assessment of Variant Abundance by Massively Parallel Sequencing for PTEN and TPMT	Other	Escherichia coli Homo sapiens	20	TSV XLS SRA Run Selector	Kenneth Matreyek	Mar 13, 2018
GSE111874	Escherichia coli Lrp regulates one-third of the genome via direct, cooperative, and indirect paths	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli	108	TSV SRA Run Selector	Peter Freddolino	Nov 28, 2018
GSE113529	Assaying RNA Structure with LASER-seq	Other	Escherichia coli Homo sapiens Saccharomyces cerevisiae	37	TSV SRA Run Selector	Boris Zinshteyn	Oct 16, 2018
GSE123854	Transcript degradation and codon usage as gene regulation in a lytic phage	Expression profiling by high throughput sequencing	Escherichia coli Escherichia phage T7	30	TSV SRA Run Selector	Claus Wilke	May 01, 2019
GSE125110	Complete genome sequence of Escherichia coli C - old model organism with a new application in biofilm research	Expression profiling by high throughput sequencing	Escherichia coli	6	TSV TXT SRA Run Selector	Joshua P Earl	Jan 01, 2020
GSE126081	Transcriptome profiling in an Escherichia coli strain collection	Expression profiling by high throughput sequencing	Escherichia coli	252	TSV SRA Run Selector	Pedro Beltrao	Mar 01, 2022
GSE132637	RNAseq transcriptome analysis of K. pneumoniae MS6671 and E. coli MS8345 treated with PBT2	Expression profiling by high throughput sequencing	Escherichia coli Klebsiella pneumoniae	12	TSV TXT SRA Run Selector	David Manuel Pereira De Oliveira	Jun 13, 2019
GSE142291	Dynamic landscape of protein occupancy across the Escherichia coli chromosome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli str. K-12 substr. MG1655	52	GR TSV SRA Run Selector	Lydia Freddolino	Jun 15, 2021
GSE148595	pAgo-induced DNA interference protects bacteria from invader DNA [smDNA]	Other	Escherichia coli	26	BEDGRAPH TSV SRA Run Selector	Anton Kuzmenko	Jul 30, 2020
GSE148596	pAgo-induced DNA interference protects bacteria from invader DNA	Other	Escherichia coli	36	BEDGRAPH TSV	Anton Kuzmenko	Jul 30, 2020
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE157014	4U-DMS-MaP probing of nascent ribosomes	Other	Escherichia coli	13	TSV TXT SRA Run Selector	Yumeng Hao	Aug 28, 2020
GSE161708	Differential transcription in E. coli WT vs. fum null mutants in response to DNA damage induction	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Escherichia coli	45	TSV ZIP SRA Run Selector	Ophry Pines	Nov 19, 2020
GSE163855	Identification of functional regulatory variants implicates distinct transcriptional networks in dementia	Other	Escherichia coli Homo sapiens	23	TSV TXT SRA Run Selector	Yonatan Ariel Cooper	Dec 25, 2020
GSE164308	Landscape of transcriptional and translational changes over 22 years of bacterial adaptation	Expression profiling by high throughput sequencing Other	Escherichia coli	8	CSV TSV SRA Run Selector	Premal Shah	Jan 12, 2021
GSE165412	Massively parallel characterization of CYP2C9 variant enzyme activity and abundance	Other	Escherichia coli Homo sapiens Saccharomyces cerevisiae	12	CSV TSV SRA Run Selector	Clara Amorosi	Mar 13, 2021
GSE174575	Bacterial Heterochromatin Formation Through Liquid-Liquid Phase Separation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	36	BED CSV TSV SRA Run Selector	Lydia Freddolino	Dec 23, 2021