GEO Browser - GEO

Series

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DataSets

24 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Escherichia coli		BEDGRAPH
GSE77181	RecG Directs DNA Synthesis During Double-Strand Break Repair [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	4	BEDGRAPH SRA Run Selector	Benura Azeroglu	May 19, 2016
GSE77184	RecG Directs DNA Synthesis During Double-Strand Break Repair	Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli	27	BEDGRAPH	Benura Azeroglu	May 19, 2016
GSE179963	Distribution of Holliday Junctions and Repair Forks during Escherichia coli DNA Double-Strand Break Repair	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	2	BEDGRAPH SRA Run Selector	Benura Azeroglu	Jul 29, 2021
GSE88725	Global analysis of translation termination in E. coli using release factor manipulations	Expression profiling by high throughput sequencing Other	Escherichia coli	30	BEDGRAPH SRA Run Selector	Natalie Baggett	Mar 09, 2017
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE159312	Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE)	Expression profiling by high throughput sequencing Other	Escherichia coli	10	BEDGRAPH XLS SRA Run Selector	David Brandt	May 31, 2023
GSE158570	Genome-wide tracking of Escherichia coli DNA polymerase V to the lagging strand during the SOS response	Other	Escherichia coli	51	BEDGRAPH SRA Run Selector	Anders R. Clausen	Mar 22, 2021
GSE180796	Anchor-Based Bisulfite Sequencing determines genome-wide DNA methylation	Methylation profiling by high throughput sequencing	Escherichia coli Homo sapiens	15	BEDGRAPH BW SRA Run Selector	Benjamin Delatte	May 23, 2022
GSE198120	High throughput analysis of binding of E. coli Lrp mutants	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	234	BEDGRAPH CSV	Lydia Freddolino	Jan 31, 2023
GSE119094	Single-nucleotide-resolution sequencing of human N6-methyldeoxyadenosine reveals strand-asymmetric clusters associated with SSBP1 in the mitochondrial genome	Other	Escherichia coli Homo sapiens Salmonella enterica subsp. enterica serovar Typhimurium	11	BED BEDGRAPH SRA Run Selector	Wee Siong Sho Goh	Nov 09, 2018
GSE189181	Ubiquitous mRNA decay fragments in E. coli redefine the functional transcriptome	Expression profiling by high throughput sequencing	Bacillus subtilis Escherichia coli synthetic construct	37	BEDGRAPH SRA Run Selector	Lydia Herzel	Apr 25, 2022
GSE51361	High resolution mapping of modified nucleobases in DNA using excision repair enzymes	Other	Escherichia coli Saccharomyces cerevisiae	11	BEDGRAPH SRA Run Selector	Jay R. Hesselberth	May 15, 2014
GSE95567	In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding	Expression profiling by high throughput sequencing Other	Escherichia coli	10	BEDGRAPH TAR SRA Run Selector	Danny Incarnato	Jul 19, 2017
GSE148594	pAgo-induced DNA interference protects bacteria from invader DNA [gDNA]	Other	Escherichia coli	18	BEDGRAPH SRA Run Selector	Anton Kuzmenko	Jul 30, 2020
GSE148595	pAgo-induced DNA interference protects bacteria from invader DNA [smDNA]	Other	Escherichia coli	26	BEDGRAPH TSV SRA Run Selector	Anton Kuzmenko	Jul 30, 2020
GSE148596	pAgo-induced DNA interference protects bacteria from invader DNA	Other	Escherichia coli	36	BEDGRAPH TSV	Anton Kuzmenko	Jul 30, 2020
GSE168010	A programmable pAgo nuclease with universal guide and target specificity from the mesophilic bacterium Kurthia massiliensis	Other	Escherichia coli	2	BEDGRAPH SRA Run Selector	Anton Kuzmenko	Mar 02, 2021
GSE157512	Multimodal multiscale analysis reveals flexible DNA contacts of bacterial nucleoprotein filaments	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	36	BED BEDGRAPH SRA Run Selector	Robert Landick	Sep 01, 2023
GSE100817	Division-induced DNA double strand breaks in the chromosome terminus region of Escherichia coli lacking RecBCD DNA repair enzyme	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	4	BEDGRAPH SRA Run Selector	David Leach	Sep 28, 2017
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Arabidopsis thaliana Caenorhabditis elegans Cereibacter sphaeroides Danio rerio Drosophila melanogaster Escherichia coli Homo sapiens Leishmania major Mus musculus Plasmodium falciparum Saccharomyces cerevisiae Trypanosoma brucei	24	BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018