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27 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Cryptococcus neoformans		SRA Run Selector
GSE32049	RNA-Seq analysis of ada2Δ, nrg1Δ and cir1Δ and KN99α wildtype cells in capsule inducing and non-inducing conditions	Expression profiling by high throughput sequencing	Cryptococcus neoformans	20	BED CUFF WIG SRA Run Selector	Brian Clifton Haynes	Jan 01, 2012
GSE43363	Stalled spliceosomes are a signal for RNAi-mediated genome defense	Non-coding RNA profiling by high throughput sequencing	Cryptococcus neoformans	1	BED TXT SRA Run Selector	Phillip Anthony Dumesic	Jan 21, 2013
GSE43189	C. neoformans gene expression in DMEM of WT and rim101 mutant cells	Expression profiling by high throughput sequencing	Cryptococcus neoformans	2	CSV SRA Run Selector	Teresa R O'Meara	Feb 02, 2013
GSE57217	Cross talk between the cell wall integrity and cAMP/protein kinase A pathways in Cryptococcus neoformans	Expression profiling by high throughput sequencing	Cryptococcus neoformans	12	GTF TXT SRA Run Selector	Maureen J Donlin	Jul 01, 2014
GSE61550	Product binding enforces the genomic specificity of a yeast Polycomb repressive complex	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Cryptococcus neoformans	33	BEDGRAPH TXT SRA Run Selector	Phillip Anthony Dumesic	Nov 10, 2014
GSE60398	Model-driven mapping of transcriptional networks reveals the circuitry and dynamics of virulence regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Cryptococcus neoformans	320	BED CUFF TXT SRA Run Selector	Ezekiel John Maier	Jan 14, 2015
GSE69532	Usv101 is a key regulator of cryptococcal virulence and determinant of host response	Expression profiling by high throughput sequencing	Cryptococcus neoformans	46	CUFF TXT SRA Run Selector	Ezekiel Maier	Mar 31, 2016
GSE73203	Convergent evolution of peptide-based quorum sensing required for virulence in a eukaryotic pathogen	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Cryptococcus neoformans	47	TXT SRA Run Selector	Christina M. Homer	Jun 08, 2016
GSE74298	C. neoformans gene expression by SIR2 deletion in strains H99 and RC2 subjected to glucose starvation	Expression profiling by high throughput sequencing	Cryptococcus neoformans	24	TXT SRA Run Selector	Jinsheng Yu	Apr 25, 2017
GSE104198	Unintended side effects of transformation are very rare	Expression profiling by high throughput sequencing	Cryptococcus neoformans	39	TXT SRA Run Selector	Ezekiel Maier	Sep 26, 2017
GSE108059	Spliceosome profiling visualizes the operations of a dynamic RNP in vivo at nucleotide resolution	Expression profiling by high throughput sequencing Other	Cryptococcus neoformans Saccharomyces cerevisiae Schizosaccharomyces pombe	56	BED BEDGRAPH CSV SRA Run Selector	Jordan Emily Burke	Feb 19, 2018
GSE125281	Cdk8 and Ssn801 regulate oxidative stress resistance and virulence in Cryptococcus neoformans	Expression profiling by high throughput sequencing	Cryptococcus neoformans	21	TSV SRA Run Selector	Yiming Kang	Jan 18, 2019
GSE133125	Ribosome profiling of Cryptococcus neoformans H99	Expression profiling by high throughput sequencing Other	Cryptococcus neoformans Cryptococcus neoformans var. neoformans	12	BEDGRAPH TXT SRA Run Selector	Edward William Joseph Wallace	Jun 22, 2019
GSE118549	RNAseq analysis of dormant cells	Expression profiling by high throughput sequencing	Cryptococcus neoformans Saccharomyces cerevisiae	24	TXT SRA Run Selector	Rachel Legendre	Aug 07, 2019
GSE136879	Landscape of gene expression variation of natural isolates of Cryptococcus neoformans in response to biologically relevant stresses	Expression profiling by high throughput sequencing	Cryptococcus neoformans	118	TXT SRA Run Selector	John R. Perfect	Sep 05, 2019
GSE137248	Transcription factor Znf2 coordinates with the chromatin remodeling SWI/SNF complex to regulate differentiation in Cryptococcus neoformans	Genome binding/occupancy profiling by high throughput sequencing	Cryptococcus neoformans	20	NARROWPEAK TXT SRA Run Selector	Zachary A Lewis	Sep 12, 2019
GSE133695	Transcriptome of Cryptococcus neoformans and Cryptococcus deneoformans	Expression profiling by high throughput sequencing Other	Cryptococcus neoformans Cryptococcus neoformans var. neoformans	108	TXT WIG SRA Run Selector	Guilhem Janbon	Jan 21, 2020
GSE147109	Sterol-response pathways mediate alkaline survival in diverse fungi.	Expression profiling by high throughput sequencing	Cryptococcus neoformans	24	TXT SRA Run Selector	J Andrew Alspaugh	Mar 18, 2020
GSE165294	Transcriptomic response of Cryptococcus neoformans to ecologically relevant nitrogen concentrations	Expression profiling by high throughput sequencing	Cryptococcus neoformans	16	TXT SRA Run Selector	Caylin Bosch	Jan 23, 2021
GSE153134	The transcription factor Pdr802 regulates Titan cell production and Cryptococcus neoformans pathogenicity	Genome binding/occupancy profiling by high throughput sequencing	Cryptococcus neoformans	12	BED NARROWPEAK SRA Run Selector	Daniel Paiva Agustinho	Feb 16, 2021