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122 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Saccharomyces cerevisiae		TSV
GSE189063	A transcriptional roadblock protects yeast centromeres	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BAM BW TSV SRA Run Selector	Glennis Amelia Logsdon	Feb 07, 2022
GSE22626	Topoisomerase II binds nucleosome-free DNA and acts redundantly with Topoisomerase I to enhance recruitment of RNA Pol II in budding yeast	Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae	15	BAR CEL TSV TXT	Adam S Sperling	Aug 01, 2011
GSE124863	TCP-seq of yeast initiation factor mutants	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	28	BED TSV TXT SRA Run Selector	Stuart Kenneth Archer	Mar 06, 2019
GSE208590	Unscheduled DNA replication in G1 causes genome instability and damage signatures indicative of replication collisions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	234	BED BW TSV	Karl-Uwe Reusswig	Jul 19, 2022
GSE132225	Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	164	BEDGRAPH TSV	Elisa Oberbeckmann	Nov 27, 2019
GSE141049	Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome [ODM-nanopore-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	2	BEDGRAPH TSV SRA Run Selector	Elisa Oberbeckmann	Nov 27, 2019
GSE141051	Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome [ODM-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	83	BEDGRAPH TSV SRA Run Selector	Elisa Oberbeckmann	Nov 27, 2019
GSE141056	Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome [ORE-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	78	BEDGRAPH TSV SRA Run Selector	Elisa Oberbeckmann	Nov 27, 2019
GSE240399	Ribonucleotides embedded in genomic DNA of Aicardi-Goutières syndrome (AGS)-orthologous mutants of Saccharomyces cerevisiae using ribose-seq protocol	Other	Saccharomyces cerevisiae	21	BEDGRAPH TSV	Francesca Storici	Dec 25, 2023
GSE288548	ChIP-seq data processing and relative and quantitative signal normalization for Saccharomyces cerevisiae	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	24	BEDGRAPH FASTA GFF3 TSV	Toshio Tsukiyama	Feb 02, 2025
GSE107813	Identification of non-coding transcripts regulated by the transcription factor Rap1 by RNA-Seq analysis	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Saccharomyces cerevisiae	18	BIGWIG TSV SRA Run Selector	Folkert van Werven	Dec 20, 2018
GSE110003	Identification of non-coding transcripts regulated by Rap1 and other transcription factors by RNA-seq analysis	Non-coding RNA profiling by high throughput sequencing	Saccharomyces cerevisiae	24	BIGWIG TSV SRA Run Selector	Folkert van Werven	Dec 20, 2018
GSE161581	A role for condensin in mediating transcriptional adaptation to environmental stimuli. [TT-Seq]	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	18	BIGWIG TSV SRA Run Selector	Lucy Lancaster	May 21, 2021
GSE267843	ChEC-seq2 of RNA Polymerase II and Preinitation Complex in S. cerevisiae	Other Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	186	BIGWIG TSV	Jason Brickner	Jun 18, 2024
GSE151348	Global repression driven by RNA polymerase II stalling in yeast	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	104	BW TSV SRA Run Selector	B. Franklin Pugh	Jan 20, 2021
GSE226854	RNA content of yeast nuclear mRNPs	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	4	BW TSV	Fabien Bonneau	Jul 24, 2023
GSE239568	Post-transcriptional regulation shapes the transcriptome of quiescent yeast	Other	Saccharomyces cerevisiae	44	BW GFF3 GTF TSV	Alison C Greenlaw	Feb 12, 2024
GSE261349	THE HISTONE CHAPERONE SPN1 PRESERVES SUBNUCLEOSOMAL STRUCTURES AT PROMOTERS AND NUCLEOSOME POSITIONING IN OPEN READING FRAMES	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	18	BW TSV	Srinivas Ramachandran	Feb 11, 2025
GSE288820	Exportin-1 functions as an adaptor for transcription factor-mediated docking of chromatin at the nuclear pore complex	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	105	BW TSV	Tiffany Ge	Mar 24, 2025
GSE104474	Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Klebsormidium nitens Saccharomyces cerevisiae Symbiodinium kawagutii Symbiodinium sp. clade B	23	CGMAP FASTA TSV SRA Run Selector	Alex de Mendoza	Apr 11, 2018