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460 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Saccharomyces cerevisiae		BW
GSE189063	A transcriptional roadblock protects yeast centromeres	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BAM BW TSV SRA Run Selector	Glennis Amelia Logsdon	Feb 07, 2022
GSE80235	The Mot1 ATPase and Spt16 Histone Chaperone Co-Regulate Transcription Through Preinitiation Complex Assembly and Nucleosome Organization	Expression profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	21	BAR BW CEL	David Auble	May 16, 2016
GSE93240	NUCLEAR FATE OF YEAST SNORNA IS DETERMINED BY COTRANSCRIPTIONAL RNT1 CLEAVAGE	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	11	BED BW SRA Run Selector	Nicholas Proudfoot	Apr 23, 2018
GSE100643	Centromeres license the mitotic condensation of yeast chromosome arms	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	51	BED BW FA GTF TXT SRA Run Selector	Pierre Chymkowitch	Oct 11, 2018
GSE112061	Structural Analysis of the Ash2L/Dpy-30 Complex Reveals a Heterogeneity in H3K4 Methylation	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	17	BED BW TXT SRA Run Selector	Ali Shilatifard	Mar 11, 2019
GSE113580	Yra1-bound R loops cause orientation-independent transcription-replication collisions and telomere instability	Other	Saccharomyces cerevisiae	2	BED BW SRA Run Selector	Andrés Aguilera	Jun 27, 2018
GSE137709	An alternative transcriptome shapes cell fate transitions in yeast (MNase-seq)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	36	BED BW SRA Run Selector	Folkert van Werven	Dec 15, 2020
GSE137711	High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	288	BED BEDPE BW	Folkert van Werven	Dec 15, 2020
GSE140614	Ruler elements in chromatin remodelers set nucleosome array spacing and phasing	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae Schizosaccharomyces pombe	450	BED BW CSV RDS TAB TXT SRA Run Selector	Elisa Oberbeckmann	Feb 10, 2020
GSE144072	INO80C chromatin remodeler prevents promiscuous transcription at replication origins	Other Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	30	BED BW SRA Run Selector	Salih Topal	Sep 07, 2020
GSE147927	A high-resolution protein architecture of the budding yeast genome	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	1251	BED BW SRA Run Selector	B. Franklin Pugh	Jan 13, 2021
GSE149163	Humanizing the Yeast Origin Recognition Complex	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	10	BED BW NARROWPEAK SRA Run Selector	Danny Leung	Oct 18, 2020
GSE151692	Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	76	BED BW NARROWPEAK SRA Run Selector	Wim J de Jonge	Jun 04, 2020
GSE156480	Checkpoint-mediated DNA polymerase e exonuclease activity curbing counteracts resection-driven fork collapse	Other	Saccharomyces cerevisiae	46	BED BW SRA Run Selector	Mohammed Al Mamun	Apr 30, 2021
GSE173527	Mechanisms of MCM2-7 loading and initial DNA melting at near base-pair resolution [MCM4 & ORC2 ChIP-exo]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	BED BW SRA Run Selector	LMS Bioinformatics Core	Jun 21, 2024
GSE182203	Unscheduled DNA replication in G1 causes genome instability and damage signatures indicative of replication collisions [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	222	BED BW SRA Run Selector	Karl-Uwe Reusswig	Sep 07, 2021
GSE202946	Swc4 protects nucleosome free chromatin of telomeres, tRNA genes and rDNA loci to inhibit genome instability [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BED BW NARROWPEAK	Yue Pan	May 14, 2022
GSE208590	Unscheduled DNA replication in G1 causes genome instability and damage signatures indicative of replication collisions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	234	BED BW TSV	Karl-Uwe Reusswig	Jul 19, 2022
GSE240779	MCM2-7 loading-dependent ORC release ensures genome-wide origin licensing	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	44	BED BW	LMS Bioinformatics Core	Jun 18, 2024
GSE252824	Impact of Nucleosomal DNA Sequences on SWR Remodeler Activity and Histone H2A.Z Targeting	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	28	BED BW	Ed Luk	Jan 13, 2024