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34 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Brassica rapa		SRA Run Selector
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE68447	Conservation of m5C in rRNA in the kingdom Plantae	Other Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Brassica rapa Caulerpa taxifolia Ginkgo biloba Nannochloropsis oculata Triticum turgidum subsp. durum	13	XLSX SRA Run Selector	Alice Louise Burgess	Oct 01, 2015
GSE68448	Conservation of m5C in tRNAs in the kingdom Plantae	Other Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Brassica rapa Caulerpa taxifolia Ginkgo biloba Nannochloropsis oculata Triticum turgidum subsp. durum	14	XLS XLSX SRA Run Selector	Alice Louise Burgess	Oct 01, 2015
GSE79881	Auxin signaling in the epidermis regulates stem growth via interactions with the brassinosteroid pathway	Expression profiling by high throughput sequencing	Arabidopsis thaliana Brassica rapa	28	XLSX SRA Run Selector	Carl Procko	Jun 30, 2016
GSE79526	Widespread natural variation of DNA methylation within angiosperms	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Beta vulgaris Brachypodium distachyon Brassica rapa Cannabis sativa Citrus x clementina Cucumis sativus Erythranthe guttata Eucalyptus grandis Eutrema salsugineum Fragaria vesca Lotus japonicus Malus domestica Manihot esculenta Medicago truncatula Panicum hallii Panicum virgatum Populus trichocarpa Prunus persica Ricinus communis Setaria viridis Sorghum bicolor Theobroma cacao Vitis vinifera	34	TSV SRA Run Selector	Robert J Schmitz	Sep 02, 2016
GSE43246	Gene expression profilling of six species of Brassica and early four generation of resynthesized B. napus (F1-F4)	Expression profiling by high throughput sequencing	Brassica carinata Brassica juncea Brassica napus Brassica nigra Brassica oleracea Brassica rapa	10	TXT SRA Run Selector	Jinjin Jiang	Jun 27, 2013
GSE46299	Tracing the transcriptomic changes of synthetic trigenomic allohexaploid in Brassica by RNA-Seq approach	Expression profiling by high throughput sequencing	Brassica carinata Brassica carinata x Brassica rapa Brassica rapa	3	TXT SRA Run Selector	Qin Zhao	Oct 10, 2014
GSE153257	The evolution of gene spatiotemporal expression in six brassica species during embryogenesis	Expression profiling by high throughput sequencing	Brassica carinata Brassica juncea Brassica napus Brassica nigra Brassica oleracea Brassica rapa	270	XLSX SRA Run Selector	Daoquan Xiang	Aug 22, 2021
GSE81845	Genome-wide gene/genome dosage imbalance regulates gene expressions in synthetic Brassica napus and derivatives (AC, AAC, CCA, CCAA)	Expression profiling by high throughput sequencing	Brassica napus Brassica oleracea Brassica rapa	12	TXT SRA Run Selector	Chen Tan	May 25, 2016
GSE84451	Transcriptomic changes accompanying allopolyploidization are commonly paralleled in Brassica napus.	Expression profiling by high throughput sequencing	Brassica napus Brassica oleracea Brassica rapa synthetic construct	19	TSV SRA Run Selector	David Christopher Tack	Jul 13, 2019
GSE94076	Accumulation of small RNA populations in response to allopolyploidy: analysis of small RNA sequencing data from resynthesized Brassica napus allotetraploid in comparison to their diploid progenitors	Non-coding RNA profiling by high throughput sequencing	Brassica napus Brassica oleracea Brassica oleracea var. botrytis Brassica rapa Brassica rapa subsp. oleifera	11	CSV SRA Run Selector	Karine Alix	Sep 15, 2017
GSE119398	Short RNAs associated to Cauliflower mosaic virus infections in Canola and Turnip	Non-coding RNA profiling by high throughput sequencing	Brassica napus Brassica rapa	4	TXT XLSX SRA Run Selector	Vitantonio Pantaleo	Sep 27, 2020
GSE61872	The role of small RNAs in wide hybridisation and allopolyploidisation between Brassica rapa and Brassica nigra	Non-coding RNA profiling by high throughput sequencing	Brassica nigra Brassica rapa Brassica rapa x Brassica nigra	4	TXT SRA Run Selector	Muhammad Awais Ghani	Sep 30, 2014
GSE132231	Brassica biased gene retention during diploidization linked to 3D genome organization	Genome binding/occupancy profiling by high throughput sequencing	Brassica oleracea Brassica rapa	8	BW SRA Run Selector	Argyris Papantonis	Jun 06, 2019
GSE36227	High-throughput sequencing of small RNAs and mRNA transcriptome during Brassica rapa seed development	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Brassica rapa	4	BEDGRAPH TXT SRA Run Selector	Jun Wang	Jan 01, 2019
GSE43245	Transcriptome sequencing of Brassica rapa tissues	Expression profiling by high throughput sequencing	Brassica rapa	8	BEDGRAPH TXT SRA Run Selector	Zhangyan Wu	Oct 09, 2013
GSE55264	Expression profile of trace metal element responsive genes in Brassica rapa	Expression profiling by high throughput sequencing	Brassica rapa	5	TXT SRA Run Selector	Jian Wu	Sep 30, 2014
GSE58895	Elucidation of stress memory inheritance through epigenome alterations in Brassica rapa plants [RNA-seq]	Expression profiling by high throughput sequencing	Brassica rapa	28	TXT SRA Run Selector	Igor Kovalchuk	Dec 01, 2014
GSE58896	Elucidation of stress memory inheritance through epigenome alterations in Brassica rapa plants [small RNA-seq]	Non-coding RNA profiling by high throughput sequencing	Brassica rapa	32	BED CSV FA FASTA TXT SRA Run Selector	Igor Kovalchuk	Dec 01, 2014
GSE69785	Transcriptome profiling of the defense response following elicitation by a bacterial pathogen or flg22	Expression profiling by high throughput sequencing	Brassica rapa	12	TXT SRA Run Selector	Elizabeth S. Sattely	Sep 21, 2015