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17 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Listeria monocytogenes			SRA Run Selector
GSE152295	RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bacterial Infections	Expression profiling by high throughput sequencing	Achromobacter xylosoxidans Acinetobacter baumannii Aggregatibacter actinomycetemcomitans Borreliella burgdorferi Burkholderia pseudomallei Campylobacter jejuni Enterococcus faecalis Escherichia coli Francisella tularensis Haemophilus influenzae Helicobacter pylori Klebsiella pneumoniae Legionella pneumophila Listeria monocytogenes Mycobacterium tuberculosis Neisseria gonorrhoeae Neisseria meningitidis Pseudomonas aeruginosa Salmonella enterica Shigella flexneri Staphylococcus aureus subsp. aureus MRSA252 Staphylococcus aureus subsp. aureus MSSA476 Staphylococcus epidermidis Streptococcus agalactiae Streptococcus pneumoniae Streptococcus pyogenes Streptococcus suis Vibrio cholerae Yersinia pseudotuberculosis	1122		TXT SRA Run Selector	Kemal Avican	Apr 23, 2021
GSE103751	Analysis of Listeria monocytogenes VirR regulon	Expression profiling by high throughput sequencing	Listeria monocytogenes	6		TXT SRA Run Selector	Pascale Cossart	Jan 23, 2022
GSE103752	Analysis of Listeria monocytogenes response to bacitracin	Expression profiling by high throughput sequencing	Listeria monocytogenes	5		TXT SRA Run Selector	Pascale Cossart	Jan 23, 2022
GSE130971	Blue Light Sensing in Listeria monocytogenes Is Temperature-Dependent and the Transcriptional Response to It Is Predominantly SigB-Dependent	Expression profiling by high throughput sequencing	Listeria monocytogenes	18		CSV XLSX SRA Run Selector	Amber Louise Dorey	Oct 30, 2019
GSE176617	Transcriptomic analysis of biofilm formation in persistent and transient Listeria monocytogenes from the retail deli environment	Expression profiling by high throughput sequencing	Listeria innocua Listeria monocytogenes	30		TXT SRA Run Selector	Andrea Etter	Jun 11, 2021
GSE98373	Identification of trancripts regulated by the Listeria monocytogenes two-component system regulator VirR by RNA-seq	Expression profiling by high throughput sequencing	Listeria monocytogenes	12		TXT SRA Run Selector	Daniel Grubaugh	Jan 11, 2018
GSE103443	RNA-sequencing based analysis of Listeria monocytogenes 10403S and H7858 and corresponding ΔsigB mutants under exposure to pH 5.5 with or without bile	Expression profiling by high throughput sequencing	Listeria monocytogenes	32		XLSX SRA Run Selector	Veronica Guariglia	Feb 01, 2018
GSE65558	Sublethal concentrations of antibiotics cause shift to anaerobic metabolism in Listeria monocytogenes and induce phenotypes linked to antibiotic tolerance	Expression profiling by high throughput sequencing	Listeria monocytogenes	12		TXT SRA Run Selector	Gitte M. Knudsen	Jun 01, 2016
GSE76821	Systems level analyses establish CodY as a multifaceted metabolic regulator integrating metabolism, motility and virulence in Listeria monocytogenes [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Listeria monocytogenes	8		XLSX SRA Run Selector	Lior Lobel	Jul 03, 2016
GSE129537	Exploring Listeria monocytogenes transcriptomes in correlation with divergence of lineages and virulence measured in Galleria mellonella	Expression profiling by high throughput sequencing	Listeria monocytogenes	66		CSV SRA Run Selector	Pierre Nicolas	Sep 10, 2019
GSE153497	RNA degradation analysis reveals ribosome dynamics in complex microbiome samples	Other	Alistipes finegoldii Bacillus amyloliquefaciens Bacillus subtilis Caulobacter vibrioides Cryptococcus neoformans Enterococcus faecalis Escherichia coli Hoylesella timonensis Lactiplantibacillus plantarum Limosilactobacillus fermentum Limosilactobacillus reuteri Listeria monocytogenes Parabacteroides merdae Saccharomyces cerevisiae Salmonella enterica Segatella copri Staphylococcus aureus Synechocystis sp. PCC 6803 compost metagenome human feces metagenome	199		BEDGRAPH TXT XLSX SRA Run Selector	Vicent Pelechano	Mar 24, 2023
GSE15651	Listeria monocytogenes Transcriptome with RNA-Seq	Expression profiling by high throughput sequencing	Listeria monocytogenes	4		TXT SRA Run Selector	Lalit Ponnala	Jan 05, 2010
GSE47721	Transcriptomic profiling of L-rhamnose utilization in Lmo0753 deletion mutant of Listeria monocytogenes EGDe from human foodborne outbreak associated lineage LII	Expression profiling by high throughput sequencing	Listeria monocytogenes	4		TXT SRA Run Selector	Joelle K Salazar	Jul 17, 2013
GSE135966	Global transcriptional response of three highly acid-tolerant field strains of L. monocytogenes to HCl stress	Expression profiling by high throughput sequencing	Listeria monocytogenes	20		TXT SRA Run Selector	Marc Stevens	Aug 20, 2019
GSE64353	RNA-sequencing based analysis of transcriptomes of Listeria monocytogenes grown on cold smoked salmon and modified BHI broth	Expression profiling by high throughput sequencing	Listeria monocytogenes	8		XLSX SRA Run Selector	Silin Tang	Jul 01, 2015
GSE154844	Chitin attenuates virulence gene expression of Listeria monocytogenes in vitro	Expression profiling by high throughput sequencing	Listeria monocytogenes	6		XLSX SRA Run Selector	Miguel Villoria Recio	Dec 22, 2020
GSE146507	RNA-sequencing of L. monocytogenes under PrfA-inducing conditions refines the PrfA regulon and reveals a putative novel PrfA-dependent gene and its associated PrfA box	Expression profiling by high throughput sequencing	Listeria monocytogenes	9		TXT SRA Run Selector	Martin Wiedmann	Oct 06, 2020