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17 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Enterococcus faecalis			SRA Run Selector
GSE45788	Transcriptome analysis of Enterococcus faecalis towards its adaption to surviving in the mouse intestinal tract	Expression profiling by high throughput sequencing	Enterococcus faecalis	2		CUFF SRA Run Selector	Juergen Behr	Mar 04, 2016
GSE79250	Differential gene expression of the nosocomial pathogen Enterococcus faecalis subjected to metal stress	Expression profiling by high throughput sequencing	Enterococcus faecalis	20		FNA GFF TXT XLSX SRA Run Selector	Emanuel Clauss-Lendzian	Mar 16, 2016
GSE58467	Genome-wide Analysis of Enterococcus faecalis OG1RF(pCF10) Gene Expression During Infection	Expression profiling by high throughput sequencing	Enterococcus faecalis	2		TXT SRA Run Selector	Kristi L Frank	Feb 09, 2017
GSE96072	Examination of E. faecalis toxin-antitoxin (TA) toxin Fst function utilizing a pheromone-inducible expression vector with tight repression and large dynamic range	Expression profiling by high throughput sequencing	Enterococcus faecalis	4		TXT SRA Run Selector	Keith E Weaver	Mar 21, 2017
GSE138552	Transcriptional response of Enterococcus faecali to the glycosylated bacteriocin glycocin F	Expression profiling by high throughput sequencing	Enterococcus faecalis	39		TXT SRA Run Selector	Sean William Bisset	Jun 30, 2020
GSE162709	Characterization of the cellular adaptation during biofilm formation in Gram positive bacteria	Expression profiling by high throughput sequencing	Enterococcus faecalis Staphylococcus aureus	48		CSV SRA Run Selector	Pascale B. Beauregard	Dec 05, 2020
GSE163794	Differential expression of genes on the Enterococcus faecalis plasmid pCF10 in the presence and absence of prgU	Expression profiling by high throughput sequencing	Enterococcus faecalis	4		WIG SRA Run Selector	Julia Willett	Dec 24, 2020
GSE168958	Pulldown of RNA using PrgU-FLAG from Enterococcus faecalis OG1RF pCF10	Other	Enterococcus faecalis	3		TXT WIG SRA Run Selector	Julia Willett	Mar 16, 2021
GSE152295	RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bacterial Infections	Expression profiling by high throughput sequencing	Achromobacter xylosoxidans Acinetobacter baumannii Aggregatibacter actinomycetemcomitans Borreliella burgdorferi Burkholderia pseudomallei Campylobacter jejuni Enterococcus faecalis Escherichia coli Francisella tularensis Haemophilus influenzae Helicobacter pylori Klebsiella pneumoniae Legionella pneumophila Listeria monocytogenes Mycobacterium tuberculosis Neisseria gonorrhoeae Neisseria meningitidis Pseudomonas aeruginosa Salmonella enterica Shigella flexneri Staphylococcus aureus subsp. aureus MRSA252 Staphylococcus aureus subsp. aureus MSSA476 Staphylococcus epidermidis Streptococcus agalactiae Streptococcus pneumoniae Streptococcus pyogenes Streptococcus suis Vibrio cholerae Yersinia pseudotuberculosis	1122		TXT SRA Run Selector	Kemal Avican	Apr 23, 2021
GSE174381	The impact of c-di-AMP levels on gene expression in Enterococcus faecalis	Expression profiling by high throughput sequencing	Enterococcus faecalis	12		CSV SRA Run Selector	Jessica K Kajfasz	May 14, 2021
GSE189399	Deep mutational scan of a drug efflux pump reveals its structure-function landscape	Other	Enterococcus faecalis	21		CSV SRA Run Selector	Gianmarco Meier	Nov 25, 2021
GSE179348	Structural basis for PoxtA-mediated resistance to Phenicol and Oxazolidinone antibiotics	Other	Enterococcus faecalis	12		BEDGRAPH SRA Run Selector	Vicent Pelechano	Feb 12, 2022
GSE192438	Gene expression in response to deoxycholate acid constraints growth of Enterococcus faecalis	Expression profiling by high throughput sequencing	Enterococcus faecalis	25		TXT SRA Run Selector	Cyprien Guérin	May 20, 2022
GSE190090	Enterococcus faecalis antagonizes Pseudomonas aeruginosa growth in mixed-species interactions	Expression profiling by high throughput sequencing	Enterococcus faecalis Pseudomonas aeruginosa	30		TXT SRA Run Selector	Casandra Tan	Jun 15, 2022
GSE165751	Enterococci enhance Clostridioides difficile pathogenesis	Expression profiling by high throughput sequencing	Clostridioides difficile Enterococcus faecalis	9		BW TSV SRA Run Selector	Joseph Zackular	Sep 17, 2022
GSE180237	Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states	Expression profiling by high throughput sequencing	Enterococcus faecalis Escherichia coli Klebsiella pneumoniae Pseudomonas aeruginosa	35		TSV TXT SRA Run Selector	Peijun Ma	Jan 27, 2023
GSE153497	RNA degradation analysis reveals ribosome dynamics in complex microbiome samples	Other	Alistipes finegoldii Bacillus amyloliquefaciens Bacillus subtilis Caulobacter vibrioides Cryptococcus neoformans Enterococcus faecalis Escherichia coli Hoylesella timonensis Lactiplantibacillus plantarum Limosilactobacillus fermentum Limosilactobacillus reuteri Listeria monocytogenes Parabacteroides merdae Saccharomyces cerevisiae Salmonella enterica Segatella copri Staphylococcus aureus Synechocystis sp. PCC 6803 compost metagenome human feces metagenome	199		BEDGRAPH TXT XLSX SRA Run Selector	Vicent Pelechano	Mar 24, 2023