GEO Browser - GEO

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110 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Rattus norvegicus		BED
GSE144147	A Balance Between Intermediate Filaments and Microtubules Maintains Nuclear Architecture in the Cardiomyocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	28	BED BIGWIG XLS SRA Run Selector	Julie Heffler	Jan 24, 2020
GSE212416	A single-cell atlas of gene expression and chromatin accessibility changes associated with cocaine addiction in the rat amygdala [snATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	12	BED CSV MTX RDS TBI TSV	Jessica Lu Zhou	Aug 09, 2023
GSE150589	ATAC-seq datasets for chromatin accessibility quantification in "Enhancer RNAs predict enhancer-gene regulatory links and are critical for enhancer function in neuronal systems"	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	18	BED SRA Run Selector	Jeremy Jason Day	Jul 28, 2020
GSE42454	Activation of the chromatin-remodeling factor Smarca4/Brg1 cooperates with Olig2 to establish oligodendrocyte identity and control CNS myelination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	19	BED	Yang Yu	Jan 20, 2013
GSE42447	Activation of the chromatin-remodeling factor Smarca4/Brg1 cooperates with Olig2 to establish oligodendrocyte identity and control CNS myelination [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	17	BED SRA Run Selector	Yang Yu	Jan 20, 2013
GSE171412	Acute alcohol produces epigenomic and transcriptomic changes in the amygdala to elicit anxiolysis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	18	BED TXT	Subhash C Pandey	Sep 22, 2022
GSE171399	Acute alcohol produces epigenomic changes in the amygdala	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	12	BED SRA Run Selector	Subhash C Pandey	Sep 22, 2022
GSE84249	Adrenalectomy plus corticosterone treatment, rat hippocampal RNA-seq	Expression profiling by high throughput sequencing	Rattus norvegicus	12	BED TAB SRA Run Selector	Richard G. Hunter	Aug 11, 2016
GSE165676	Animal models of neurodevelopmental disorders treated with TAK-418	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus Rattus norvegicus	119	BED	Satoru Matsuda	Jan 29, 2021
GSE134935	Cannabinoid exposure in rat adolescence reprograms the initial behavioral, molecular, and epigenetic response to cocaine	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	22	BED TXT XLSX SRA Run Selector	Philippe Melas	Jul 27, 2019
GSE116746	ChIP-Sequencing analysis of YY1 binding DNA in radiation-induced skin fibrosis of rats	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	4	BED SRA Run Selector	zhang shu yu	Jul 13, 2018
GSE84011	ChIP-seq analysis of oligodendrocytes treated with demyelinating compound lysolecithin	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	4	BED SRA Run Selector	Ying Chen	Oct 25, 2016
GSE57232	ChIP-seq experiment analyzing binding of HDAC2 and HDAC3 to genomic loci in rat Neural Stem Cells	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	8	BED SRA Run Selector	Ola Hermanson	Jun 17, 2014
GSE127793	Characterization of Npas4 and heterodimer DNA binding in stimulated and silenced rat neurons	Other Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	24	BED BW TXT SRA Run Selector	Michael Hayes	Oct 02, 2019
GSE72725	Chromatin Remodeler CHD7 mutated in CHARGE Syndrome Interacts with Sox10 to Regulate Timing of CNS Myelination and Remyelination [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	2	BED SRA Run Selector	Richard Lu	Feb 29, 2016
GSE72727	Chromatin Remodeler CHD7 mutated in CHARGE Syndrome Interacts with Sox10 to Regulate Timing of CNS Myelination and Remyelination.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Rattus norvegicus	6	BED TXT	Richard Lu	Feb 29, 2016
GSE178673	Chromatin landscape in perinatal cardiomyocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	28	BED BW GTF HIC SRA Run Selector	Zhang Jing	Feb 03, 2023
GSE212417	Cocaine addiction-like behaviors are associated with long-term changes in gene regulation, energy metabolism, and GABAergic inhibition within the amygdala	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	35	BED CSV MTX TAR TBI TSV	Jessica Lu Zhou	Aug 09, 2023
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25	BED HDF5 XLS SRA Run Selector	Mengnan He	Apr 12, 2022