GEO Browser - GEO

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1159 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		WIG
GSE166179	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	1185	CSV H5 SF WIG	Eneritz Agirre	May 21, 2021
GSE142468	Transcription factor TCF1 is indispensable for the epigenetic priming of EILPs toward distinct cell fates	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	902	BED WIG XLSX SRA Run Selector	Keji Zhao	Dec 31, 2020
GSE138646	Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	790	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Mar 02, 2020
GSE210817	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	571	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Oct 31, 2023
GSE72720	CTCF binding polarity determines chromatin looping	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	506	BED WIG	Elzo de Wit	Oct 29, 2015
GSE72539	CTCF binding polarity determines chromatin looping [4C]	Other	Mus musculus	504	WIG SRA Run Selector	Elzo de Wit	Oct 29, 2015
GSE211574	Replication dynamics identifies the folding principles of the inactive X chromosome	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	369	BEDGRAPH WIG	Rawin Poonperm	Jul 11, 2023
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	266	BAM BED BIGWIG BROADPEAK NARROWPEAK WIG	ENCODE DCC	Nov 20, 2014
GSE116704	CG dinucleotides enhance promoter activity independent of DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	186	TAB WIG SRA Run Selector	Dirk Schuebeler	Jan 20, 2019
GSE162609	ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	185	BEDPE BW WIG	Jinxiu Li	Jan 01, 2023
GSE134020	Mammalian RNA decay pathways are highly specialized and widely linked to translation	Expression profiling by high throughput sequencing Other	Mus musculus	183	BIGWIG TXT WIG SRA Run Selector	Alex Charles Tuck	Jan 29, 2020
GSE155972	Epigenetic Silencing by SETDB1 Suppresses Tumor-cell Intrinsic Immunogenicity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	177	CSV H5 TXT WIG SRA Run Selector	Jingyi Wu	Mar 18, 2021
GSE88817	In situ CAPTURE of chromatin interactions by biotinylated dCas9	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	175	BED WIG	Jian Xu	Aug 24, 2017
GSE200586	Chromatin opening by p53 is confined by Trim24 in a histone methylation-dependent manner	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	174	BW WIG	Luke Thomas Isbel	Apr 29, 2023
GSE129735	KDM4A mediates maternal zygotic transition in mammals	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	164	TXT WIG	Aditya Sankar	Jan 27, 2020
GSE217970	Mapping putative enhancers in mouse oocyte and early embryo reveals TCF3/12 as key folliculogenesis regulators	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	164	BED BEDGRAPH BW TXT WIG	Bofeng Liu	Mar 23, 2024
GSE222972	Epigenomic analysis of regulatory evolution in mole rats	Genome binding/occupancy profiling by high throughput sequencing Other	Cavia porcellus Fukomys damarensis Heterocephalus glaber Mus musculus	160	NARROWPEAK WIG	Diego Villar	Aug 21, 2023
GSE90895	Cooperative binding of Oct4, Sox2, and Klf4 with stage-specific transcription factors orchestrates reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	150	BED WIG	Kathrin Plath	Jan 19, 2017
GSE74410	Prdm1	Expression profiling by array Expression profiling by high throughput sequencing	Mus musculus	149	BEDGRAPH TXT WIG	Andrew Christopher Nelson	Mar 14, 2016
GSE210815	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	147	BEDGRAPH TXT WIG	Xiao Ge	Oct 31, 2023