GEO Browser - GEO

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1898 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		BEDGRAPH
GSE210806	Single-cell triple-omics uncovers DNA methylation as key feature of stemness in the healthy and ischemic adult brain	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	4532	BEDGRAPH COV	Ana Martin-Villalba	Aug 12, 2022
GSE270915	The expression order determines the pioneer functions of Ngn3 and NeuroD1 in pancreatic endocrine differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3745	BEDGRAPH CSV MTX TAR TBI TSV	Cheng-ran Xu	Feb 15, 2025
GSE113985	Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	960	BEDGRAPH BIGWIG TXT	Ichiro Hiratani	Jun 26, 2019
GSE114470	Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization [scRepli-seq]	Other	Mus musculus	884	BEDGRAPH BIGWIG TXT SRA Run Selector	Ichiro Hiratani	Jun 26, 2019
GSE138646	Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	790	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Mar 02, 2020
GSE142089	Dynamics of chromatin marks and the role of EZH2/JMJD3/P300 during hepatoblast differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	658	BED BEDGRAPH CSV SRA Run Selector	Cheng-ran Xu	Jun 26, 2023
GSE210817	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	571	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Oct 31, 2023
GSE112551	Molecular mapping of nuclear lamina interactions in the mammalian embryo reveals de novo establishment of nuclear architecture	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	556	BED BEDGRAPH TXT SRA Run Selector	Jop Kind	Mar 13, 2019
GSE262791	LaminB1 DamID, RNA-seq and Genome-wide analysis of replication timing in RIF1 depleted preimplantation mouse embryos	Other Expression profiling by high throughput sequencing	Mus musculus	468	BED BEDGRAPH TAB	Tamas Schauer	Mar 18, 2025
GSE206499	Marsupial DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Monodelphis domestica Mus musculus Mus musculus x Mus spretus	435	BEDGRAPH	James Turner	Jan 12, 2025
GSE105012	Single cell chromatin immunocleavage sequencing (scChIC-Seq) to profile histone modification	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	425	BED BEDGRAPH TXT SRA Run Selector	Keji Zhao	Mar 28, 2019
GSE262790	Genome-wide analysis of replication timing in RIF1 depleted preimplantation mouse embryos	Other	Mus musculus	416	BEDGRAPH TXT	Tamas Schauer	Mar 18, 2025
GSE211574	Replication dynamics identifies the folding principles of the inactive X chromosome	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	369	BEDGRAPH WIG	Rawin Poonperm	Jul 11, 2023
GSE111121	Profiling of pluripotency factors in single cells and early embryos	Other	Mus musculus	361	BEDGRAPH SRA Run Selector	Sarah J Hainer	Jul 20, 2018
GSE138919	Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [IV]	Other	Homo sapiens Mus musculus	358	BEDGRAPH SRA Run Selector	Xiao Ge	Mar 06, 2020
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE226268	The AAV capsid can influence the epigenetic marking of rAAV delivered episomal genomes in a species dependent manner	Other	Homo sapiens Mus musculus	342	BEDGRAPH	Katja Pekrun	Feb 28, 2023
GSE106872	Analysis of the Clustered Protocadherin (cPcdh) Locus in Human Pluripotent Stem and Derived Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	341	BEDGRAPH	Daria Merkurjev	Jul 29, 2019
GSE83833	Genome-wide characterization of histone mark co-occurrence at single molecule resolution	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	310	BEDGRAPH BIGWIG SRA Run Selector	Ido Amit	Jul 13, 2016
GSE278721	Low-input genomics screening reveals epigenetic pathways that orchestrate nuclear organization in early mouse embryos.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	288	BED BEDGRAPH TXT	Maria-Elena Torres-Padilla	Apr 10, 2025