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5833 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057		Mus musculus		SRA Run Selector
GSE113081	Comparative Transcriptomic Analysis of Dermal Wound Healing Reveals De Novo Skeletal Muscle Regeneration in Acomys cahirinus	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	24	FASTA TXT SRA Run Selector	Jason Orr Brant	Apr 25, 2019
GSE159938	Symmetry breaking of tissue mechanics in wound induced hair follicle regeneration [bulk RNA-seq]	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	25	TXT SRA Run Selector	Hans I-Chen Harn	Feb 19, 2021
GSE116502	A conserved odor detection pathway via modulation of chromatin and cellular gene expression	Expression profiling by high throughput sequencing	Arabidopsis thaliana Drosophila melanogaster Mus musculus	34	TSV SRA Run Selector	Christi Ann Scott	Jul 28, 2020
GSE134516	A universal, benchtop, gel-free method for the rapid and simultaneous isolation of all known classes of functional small RNAs	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Drosophila melanogaster Mus musculus	49	CSV SRA Run Selector	Stefan Oberlin	Jul 01, 2020
GSE163549	TENT5 cytoplasmic non-canonical poly(A) polymerases regulate the innate immune response in animals	Expression profiling by high throughput sequencing	Caenorhabditis elegans Mus musculus	18	TSV SRA Run Selector	Andrzej Dziembowski	Oct 01, 2022
GSE134705	Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program (scRNA-seq)	Expression profiling by high throughput sequencing	Callithrix jacchus Danio rerio Gallus gallus Homo sapiens Macaca fascicularis Mesocricetus auratus Mus musculus Nannospalax galili Ovis aries Rattus norvegicus	37	TXT SRA Run Selector	Ido Amit	Dec 12, 2019
GSE134706	Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program (bulk RNA-seq)	Expression profiling by high throughput sequencing	Callithrix jacchus Danio rerio Gallus gallus Homo sapiens Macaca fascicularis Mesocricetus auratus Mus musculus Ovis aries Rattus norvegicus	44	TXT SRA Run Selector	Ido Amit	Dec 12, 2019
GSE151761	Innovations in primate interneuron repertoire	Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus Mustela putorius furo	123	TXT SRA Run Selector	Fenna Marie Krienen	Jun 04, 2020
GSE77543	Dynamics of NRSF/REST motif evolution favor the canonical NRSE/RE1 form	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Equus caballus Mus musculus	9	TXT SRA Run Selector	Shan Jiang	Jan 01, 2024
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Danio rerio Equus caballus Homo sapiens Mus musculus Sus scrofa domesticus	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE122785	Unveil the transcriptional landscape at the Cryptococcus-host axis in mice and nonhuman primates	Expression profiling by high throughput sequencing	Cryptococcus neoformans H99 Macaca fascicularis Mus musculus	21	TXT SRA Run Selector	Li Hailong	Jun 28, 2019
GSE85755	Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations	Expression profiling by high throughput sequencing	Danio rerio Mus musculus	21	CSV FA TSV TXT SRA Run Selector	Susanne C van den Brink	Sep 28, 2017
GSE128350	Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta	Expression profiling by high throughput sequencing	Danio rerio Gallus gallus Homo sapiens Mus musculus	27	CSV PDF XLSX SRA Run Selector	Catherine Robin	Jun 05, 2020
GSE135406	Comparative transcriptomic and epigenomic analysis identifies key regulators of injury response and neurogenic competence in retinal glia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	145	NARROWPEAK XLSX SRA Run Selector	Jie Wang	May 01, 2020
GSE143801	Zebrafish chemical compound screen uncovers inducers of skeletal muscle engraftment across species	Expression profiling by high throughput sequencing	Danio rerio Mus musculus	18	TXT SRA Run Selector	Leonard Zon	Jan 16, 2023
GSE144063	Identification of mecciRNAs and their roles in the mitochondrial entry of proteins	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	16	BED TXT SRA Run Selector	Ge Shan	Jan 23, 2020
GSE89164	Cell fixation and preservation for droplet-based single cell transcriptomics	Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	18	TXT SRA Run Selector	Nikos Karaiskos	May 03, 2017
GSE95781	Histone H3K4 monomethylation catalyzed by Trr and mammalian COMPASS-like proteins at enhancers is dispensable for development and viability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	93	BW SRA Run Selector	Ali Shilatifard	Oct 02, 2017
GSE101646	A cryptic Tudor domain links BRWD2/PHIP to COMPASS-mediated histone H3K4 methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	84	BW SRA Run Selector	Ali Shilatifard	Nov 02, 2017