GEO Browser - GEO

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53 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057		Mus musculus		HIC
GSE243851	Nuclear Organization of Lens Epithelium and Fiber Cells in Newborn Lens	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH BEDPE BW HIC NARROWPEAK	William Chang	Oct 16, 2023
GSE241741	Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	96	BW HIC	Xiang Qiu	Jan 22, 2025
GSE241661	Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus [Capture Hi-C]	Other	Mus musculus	14	HIC	Xiang Qiu	Jan 22, 2025
GSE232459	Histone demethylase KDM5D upregulation drives sex differences in colon cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BW HIC	Jiexi Li	May 12, 2023
GSE229179	Selective compartmentalization in condensin-depleted mitotic chromosomes [Hi-C]	Other	Mus musculus	4	COOL HIC	Haoyue Zhang	Nov 22, 2023
GSE228519	Transcriptional and epigenomic profiling identifies YAP signaling as a key regulator of intestinal epithelium maturation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	41	BW HIC TDF	Laura Maarit Pikkupeura	Jul 13, 2023
GSE228402	Selective compartmentalization in condensin-depleted mitotic chromosomes	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	146	BW COOL HIC	Haoyue Zhang	Nov 22, 2023
GSE228395	Selective compartmentalization in condensin-depleted mitotic chromosomes [HiC-C]	Other	Mus musculus	14	COOL HIC	Haoyue Zhang	Nov 22, 2023
GSE227445	Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration	Other	Mus musculus	35	BED HIC TXT	Vishnu Dileep	Sep 27, 2023
GSE227443	Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration [Hi-C]	Other	Mus musculus	18	HIC	Vishnu Dileep	Sep 27, 2023
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE226499	Epigenetic evolution of the Ly49 gene family [Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	HIC	Changxu Fan	Apr 20, 2024
GSE213597	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BW HIC MTX TBI TSV	Kim Nichols	Aug 24, 2023
GSE213595	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice [Hi-C]	Other	Mus musculus	2	BED BW HIC TBI	Kim Nichols	Aug 24, 2023
GSE211904	A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	67	BW HIC TXT	Filippo M. RIJLI	Apr 27, 2023
GSE211901	A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest [Hi-C]	Other	Mus musculus	8	HIC	Filippo M. RIJLI	Apr 28, 2023
GSE208145	R-loop associated G-quadruplexes reinforce CTCF interactions	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	66	BW HIC TXT	Phillip Wulfridge	Jun 26, 2023
GSE200114	Dynamic promoter-enhancer contacts contribute to spatiotemporal gene expression during mouse fetal development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	70	BEDPE BIGWIG HIC NARROWPEAK	Ming Hu	Sep 02, 2024
GSE191195	WAPL functions as a rheostat of Protocadherin isoform diversity that controls neural wiring	Expression profiling by high throughput sequencing Other	Mus musculus	28	BW H5 HIC	Lea Kiefer	Jun 22, 2023
GSE190057	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED HIC MTX TBI TSV TXT	CBDM Lab	Dec 03, 2021