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318 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					TBI
GSE299331	WNT signaling in human pluripotent stem cells promotes HDAC2-dependent epigenetic programs and development of retinoic acid-responsive mesoderm	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BED CSV H5 TBI TSV	Bao Thai	Jun 17, 2025
GSE298342	Enhanced gliogenesis and delayed maturation underpin the neurodevelopmental defects in Lowe syndrome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	6	H5 TBI TSV	Raghu Padinjat	Jun 03, 2025
GSE267792	Transcriptional characterization of ILC1 and different subsets of ILC3s lacking REV-ERBs.	Expression profiling by high throughput sequencing	Mus musculus	30	MTX TBI TSV	Alina Ulezko Antonova	May 31, 2025
GSE267917	Transcriptional characterization of ILC1 and different subsets of ILC3s lacking REV-ERBs. [scRNA]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	MTX TBI TSV	Alina Ulezko Antonova	May 31, 2025
GSE298184	A Mechanistic basis of fast myofiber vulnerability in neuromuscular diseases [Multiome]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	12	H5 MTX TBI TSV	Matthieu Dos Santos	May 29, 2025
GSE298200	Gene regulatory programs of NK cells show that NCAM1 (CD56) and KIRs are controlled by genetically polymorphic distal regulatory elements	Genome binding/occupancy profiling by array Other	Homo sapiens	4	H5 MTX TBI TSV	Patrick Collins	May 28, 2025
GSE271329	Restriction of innate Tgd17 cell plasticity by an AP-1 regulatory axis [multiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	CSV H5 MTX TBI TSV	Maria Ciofani	May 27, 2025
GSE290581	Restriction of innate Tgd17 cell plasticity by an AP-1 regulatory axis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	CSV H5 MTX NARROWPEAK TBI TSV	Maria Ciofani	May 26, 2025
GSE297712	Gene regulatory programs of NK cells show that NCAM1 (CD56) and KIRs are controlled by genetically polymorphic distal regulatory elements [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	H5 TBI TSV	Patrick Collins	May 24, 2025
GSE272181	An enhancer-AAV toolbox to target and manipulate distinct interneuron subtypes	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	H5 TBI TSV	Min Dai	May 21, 2025
GSE277242	An enhancer-AAV toolbox to target and manipulate distinct interneuron subtypes [P28]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	H5 TBI TSV	Min Dai	May 21, 2025
GSE168828	HBO1 is an epigenetic determinant of hepatocyte-to-ductal reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Mus musculus	86	BROADPEAK BW TBI TSV TXT SRA Run Selector	Wei-Chien Yuan	May 20, 2025
GSE290258	Satb1 directs the differentiation of TH17 cells through suppression of IL-2 expression [scMultiom ATAC/RNA-seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	12	BED TAR TBI	Joachim Schultze	May 20, 2025
GSE296841	Multi-omics Profiling of the Lateral Ventricle Choroid Plexus Reveals Temporal Cellular Remodeling, Early Immune Gene Activation, and a Novel Epithelial Subtype [snMultiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	H5 RDS TBI TSV	Mónica da Silva Fernandes	May 19, 2025
GSE296599	SOX9 is a driver of a stem-like transcriptional state and platinum resistance in high-grade serous ovarian cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	MTX TBI TSV	Mazhar Adli	May 16, 2025
GSE226009	Single-cell genomics demonstrates cellular and molecular dynamics in the malignancy of colorectal cancer [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	TBI TSV	Cunyu Wang	May 15, 2025
GSE226012	Single-cell genomics demonstrates cellular and molecular dynamics in the malignancy of colorectal cancer.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	39	LOOM TAR TBI TSV TXT	Cunyu Wang	May 15, 2025
GSE296091	Analysis of changes in inter-cellular communications during Alzheimer's Disease pathogenesis reveals conserved changes in glutamatergic transmission in mice and humans	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	8	CSV MTX TBI TSV	Kevin T Beier	May 05, 2025
GSE294772	Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain Aging [snATAC-Seq] [10X Multiome]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	142	H5 H5AD TBI TSV	Maria Luisa Amaral	May 02, 2025
GSE290242	The Motor Neuron m6A Repertoire Governs Neuronal Homeostasis and Augmented m6A Production Mitigates ALS Symptom Manifestation [snMultiome-seq]	Expression profiling by high throughput sequencing	Mus musculus	4	BIGWIG H5 TBI TSV	Ya-Ping Yen	Apr 30, 2025