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1122 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					GFF
GSE21714	Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM GFF SRA Run Selector	Gareth Wilson	Jan 01, 2011
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE30833	Genome Sequencing of Gastric Cancer Reveals Diverse Mutational and Pathogen Signatures	Genome variation profiling by high throughput sequencing	Homo sapiens	8	BAM GFF TXT SRA Run Selector	Axel HILLMER	Dec 05, 2012
GSE31602	Tissue-specific nuclei purification from animal models for genome-wide expression and chromatin profiling.	Expression profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	18	BAM BEDGRAPH GFF PAIR PDF TXT WIG SRA Run Selector	Jorja Henikoff	Dec 05, 2011
GSE49417	The conserved organization of the human and mouse transcriptomes	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	64	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF	ENCODE DCC	Nov 20, 2014
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE18231	WAGO pathway	Non-coding RNA profiling by genome tiling array Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans	20	BAR CEL GFF TAR	Craig Mello	Oct 01, 2009
GSE18457	ChIP-chip from HCT116 cells treated with MMS and LNCaP cells with ATF3	Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Homo sapiens	10	BAR BED GFF PAIR PDF TXT XLS	Yujiro Tanaka	Oct 01, 2010
GSE23537	modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	247	BAR BED BEDGRAPH CEL GFF WIG SRA Run Selector	Kevin P. White	Aug 11, 2010
GSE14603	Gene Body Hypermethylation of ATM in Peripheral Blood DNA of Bilateral Breast Cancer Patients	Methylation profiling by genome tiling array	Homo sapiens	14	BED GFF PAIR WIG	James Flanagan	Jan 29, 2009
GSE15884	High resolution analysis of epigenetic changes associated with X inactivation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array	Mus musculus	58	BED GFF TXT WIG	H.G. Stunnenberg	Jun 06, 2009
GSE19461	Activin/Nodal signalling controls divergent transcriptional networks in pluripotent and endoderm progenitors.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED GFF TXT SRA Run Selector	Matthew Trotter	Nov 11, 2011
GSE21301	Orchestration of development by the bifunctional transcription factor, APETALA2	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED GFF SRA Run Selector	Felix Ott	Apr 13, 2010
GSE23787	H2A.Z Demarcates Intergenic Regions of the Plasmodium falciparum Epigenome That Are Dynamically Marked by H3K9ac and H3K4me3	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Plasmodium falciparum 3D7	29	BED GFF TXT	H.G. Stunnenberg	Oct 28, 2010
GSE23867	Epigenetic profile of the Plasmodium falciparum intraerythrocytic cycle	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum 3D7	17	BED GFF SRA Run Selector	H.G. Stunnenberg	Oct 28, 2010
GSE23868	Representative Illumina sequencing libraries upon T7-polymerase based amplification	Other	Plasmodium falciparum 3D7	4	BED GFF SRA Run Selector	H.G. Stunnenberg	Oct 28, 2010
GSE24382	Lamin binding profiles in the ENCODE regions	Genome binding/occupancy profiling by genome tiling array	Homo sapiens	6	BED GFF	Ghia Euskirchen	Jan 10, 2011
GSE24398	Diverse roles and interactions of the SWI/SNF chromatin-remodeling complex revealed using global approaches	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	10	BED GFF	Ghia Euskirchen	Jan 10, 2011
GSE25933	Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array	Caenorhabditis elegans	31	BED GFF GFF3 PAIR SAM TXT WIG	DCC modENCODE	Dec 22, 2010