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1064 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					FASTA
GSE222164	Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen	Expression profiling by high throughput sequencing	Zymoseptoria tritici Triticum aestivum	114	FASTA TXT	Daniel Smith	Jan 13, 2023
GSE89337	Regulation of DNA replication time is crucial for appropriate gene expression	Other	Zygosaccharomyces rouxii Saccharomyces cerevisiae Naumovozyma castellii Nakaseomyces glabratus Lachancea kluyveri Kluyveromyces lactis Henningerozyma blattae	14	FASTA WIG SRA Run Selector	Conrad A Nieduszynski	Jun 28, 2017
GSE116989	Transcriptome Analyses of Heart and Liver Reveal Novel Pathways for Regulating Songbird Migration	Expression profiling by high throughput sequencing	Zonotrichia albicollis	40	FASTA TXT SRA Run Selector	William J. Horton	Apr 23, 2019
GSE76939	RNA-Seq analysis, transcriptome assembly and gene expression profile analysis for Zea may ssp. mexicana L. under cold and drought stress	Expression profiling by high throughput sequencing	Zea mays subsp. mexicana	6	FASTA TXT SRA Run Selector	Xiang LU	Jan 19, 2016
GSE128432	Transcriptomes of maize seedlings under water and salinity treatment	Expression profiling by high throughput sequencing	Zea mays	24	FASTA TXT SRA Run Selector	Yijun Wang	Mar 15, 2022
GSE199300	The transcriptomic responses of maize stalks infected with Fusarium graminearum PH-1 and Δcfem1	Expression profiling by high throughput sequencing	Zea mays	9	FASTA GFF3 TXT	Weihua Tang	Nov 12, 2022
GSE199302	The transcriptomic analysis of maize stalks infected by Fusarium graminearum PH-1	Expression profiling by high throughput sequencing	Zea mays	1	FASTA GFF3 TXT	Weihua Tang	Nov 12, 2022
GSE142491	De novo transcriptome assembly of the five major organs of Zanthoxylum armatum and the identification of genes involved in terpenoid compounds and fatty acids metabolism	Expression profiling by high throughput sequencing	Zanthoxylum armatum	15	FASTA TXT SRA Run Selector	Wenkai Hui	Feb 03, 2020
GSE123081	Transcriptome change in response to ochratoxin A (OTA) in Yarrowia lipolytica Y-2	Expression profiling by high throughput sequencing	Yarrowia lipolytica	2	FASTA TXT SRA Run Selector	Kaili Wang	Nov 29, 2018
GSE231399	Enhanced nitrogen removal via Yarrowia lipolytica-mediated nitrogen and related metabolism of Chlorella pyrenoidosa from wastewater	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Yarrowia lipolytica Auxenochlorella pyrenoidosa	24	FASTA XLSX	Danni Lin	Jul 12, 2023
GSE211408	Single cell atlas of Xenoturbella bocki highlights the limited cell-type complexity of a non-vertebrate deuterostome lineage	Expression profiling by high throughput sequencing	Xenoturbella bocki	1	FASTA TSV TXT	Arnau Sebe-Pedros	Dec 11, 2023
GSE123301	Conserved Transcriptomic Profiles Underpin Monogamy across Vertebrates	Expression profiling by high throughput sequencing	Xenotilapia spiloptera Xenotilapia ornatipinnis Ranitomeya imitator Prunella modularis Peromyscus maniculatus Peromyscus californicus Oophaga pumilio Microtus pennsylvanicus Microtus ochrogaster Anthus spinoletta	10	CSV FASTA SRA Run Selector	Rebecca L Young	Dec 18, 2018
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Xenopus laevis Triticum aestivum Strongylocentrotus purpuratus Saccharomyces cerevisiae Python bivittatus Pygocentrus nattereri Pleurobrachia bachei Notamacropus eugenii Muntiacus reevesi Muntiacus muntjak Lethenteron camtschaticum Hypsibius dujardini Homo sapiens Gallus gallus Drosophila melanogaster Culex quinquefasciatus Cristatella mucedo Clonorchis sinensis Ciona intestinalis Chiloscyllium punctatum Caenorhabditis elegans Branchiostoma lanceolatum Arachis hypogaea Aplysia californica Agaricus bisporus Aedes aegypti Acropora millepora	32	BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE111639	Xenopus andrei RNA-Seq	Expression profiling by high throughput sequencing	Xenopus andrei	9	FASTA TXT SRA Run Selector	Margaret Saha	Mar 10, 2018
GSE80267	Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation	Expression profiling by high throughput sequencing	Xanthomonas retroflexus Stenotrophomonas rhizophila Paenibacillus amylolyticus Microbacterium oxydans	17	FASTA TXT SRA Run Selector	Lea Benedicte Skov Hansen	Jul 22, 2016
GSE144470	RNA-seq analysis of Withania somnifera after exposure to high salt concentrations	Expression profiling by high throughput sequencing	Withania somnifera	6	FASTA TXT SRA Run Selector	Anna-Maria Oberholster	Dec 31, 2020
GSE100126	RNAseq data for de novo assembly of the Vuilleminia comedens transcriptome as it grows on wood	Expression profiling by high throughput sequencing	Vuilleminia comedens	3	FASTA TXT XLSX SRA Run Selector	Daniel Eastwood	Jun 16, 2020
GSE256507	Emx2 underlies the development and evolution of marsupial gliding membranes	Other	Vombatus ursinus Tarsipes rostratus Pseudochirops cupreus Pseudochirops corinnae Pseudochirops archeri Pseudocheirus peregrinus Pseudocheirus occidentalis Phalanger gymnotis Petaurus breviceps Petauroides volans Macropus giganteus Macropus fuliginosus Distoechurus pennatus Dactylopsila trivirgata Acrobates pygmaeus	15	FASTA	Olga Dudchenko	May 22, 2024
GSE67191	Comparative transcriptomics of Central Asian Vitis vinifera accessions reveals distinct defense strategies against powdery mildew	Expression profiling by high throughput sequencing	Vitis vinifera subsp. sylvestris Vitis vinifera	96	FASTA TXT SRA Run Selector	Dario Cantu	Jul 20, 2015
GSE85079	Genome-wide expression profiling of Neofusicoccum parvum virulence factors in response to different growth substrates in vitro and during an interaction time course with grapevine stems	Expression profiling by high throughput sequencing	Vitis vinifera Neofusicoccum parvum	30	FASTA TXT SRA Run Selector	Mélanie Massonnet	Mar 08, 2017