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1123 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					FA
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE21512	Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED FA TXT SRA Run Selector	Christopher Benner	May 27, 2010
GSE21978	A global network of transcription factors, involving E2A, EBF1 and FOXO1, that orchestrates the B cell fate	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BED FA TXT SRA Run Selector	Christopher Benner	Jun 13, 2010
GSE22609	Genome-Wide Maps of WT and DBDmut Estrogen Receptor in Human Breast Cancer Cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED BEDGRAPH FA	Joshua D Stender	Jun 30, 2010
GSE22610	Genome-Wide Analysis of Estrogen Receptor-α DNA Binding and Tethering Mechanisms	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	26	BED BEDGRAPH CEL FA	Joshua D Stender	Jun 30, 2010
GSE23619	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Illumina sequencing data)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BED FA TXT SRA Run Selector	Christopher Benner	Jan 01, 2011
GSE23622	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	55	BED FA TXT	Christopher Benner	Jan 01, 2011
GSE27823	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells [ChIP-Seq, Gro-Seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED BEDGRAPH FA SRA Run Selector	Christopher Benner	May 15, 2011
GSE27824	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	42	BED BEDGRAPH FA	Christopher Benner	May 15, 2011
GSE27837	Small RNA sequences from Schizosaccharomyces japonicus	Non-coding RNA profiling by high throughput sequencing	Schizosaccharomyces japonicus	2	BED FA	Matthew Wayne Vaughn	Mar 09, 2011
GSE58896	Elucidation of stress memory inheritance through epigenome alterations in Brassica rapa plants [small RNA-seq]	Non-coding RNA profiling by high throughput sequencing	Brassica rapa	32	BED CSV FA FASTA TXT SRA Run Selector	Igor Kovalchuk	Dec 01, 2014
GSE61991	Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity	Expression profiling by high throughput sequencing	Mus musculus Rattus norvegicus	35	BED FA TXT SRA Run Selector	Xintian Arthur YOU	Feb 25, 2015
GSE64242	Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea	Expression profiling by high throughput sequencing	Brassica juncea	6	BED DIFF FA FPKM_TRACKING TXT SRA Run Selector	Gopal Joshi	Aug 28, 2015
GSE69208	roX ChIRP-seq in four Drosophila species	Genome binding/occupancy profiling by high throughput sequencing	Drosophila busckii Drosophila melanogaster Drosophila virilis Drosophila willistoni	35	BED BEDGRAPH BW FA RTF XLSX SRA Run Selector	Kun Qu	Jan 25, 2016
GSE69433	Production of functional small interfering RNAs by human Dicer	Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens Human poliovirus 1 strain Sabin	21	BED FA SRA Run Selector	Edward Matthew Kennedy	Dec 02, 2015
GSE69839	CENP-T and CENP-C bridge adjacent CENP-A nucleosomes on young alpha-satellite dimers	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	BED FA SRA Run Selector	Jorja Henikoff	May 24, 2016
GSE71032	Codon usage influences the local rate of translation elongation to regulate co-translational protein folding	Expression profiling by high throughput sequencing Other	Neurospora crassa	8	BED FA WIG SRA Run Selector	Yunkun Dang	Jul 18, 2015
GSE74026	Differential DNA Methylation Analysis without a Reference Genome	Methylation profiling by high throughput sequencing	Bos taurus Cyprinus carpio Homo sapiens	44	BED FA SRA Run Selector	Christoph Bock	Dec 03, 2015
GSE77027	Genome-wide identification of snoRNA-guided 2’-O-methylation sites [CLIP-seq]	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	1	BED FA SRA Run Selector	Rafal Gumienny	May 01, 2016
GSE77028	Genome-wide identification of snoRNA-guided 2?-O-methylation sites with CLIP and Ribometh-seq	Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens	9	BED BEDGRAPH FA	Rafal Gumienny	May 01, 2016