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15841 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BW
GSE280482	High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops (SDS test)	Other	Homo sapiens	71	3DG BW HIC MCOOL TXT	Xiaoliang Sunney Xie	Feb 28, 2025
GSE281150	High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops	Other	Homo sapiens	829	3DG BW HIC MCOOL PAIRS TAR TXT	Xiaoliang Sunney Xie	Feb 28, 2025
GSE240585	Baf155 controls hematopoietic differentiation and regeneration through chromatin priming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	ARROW BW MTX TSV	Changxu Fan	Jul 08, 2024
GSE255104	Temporal control of progenitor competence shapes maturation in GABAergic neuron development in mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	ARROW BW	Christian Mayer	Apr 09, 2025
GSE31456	Transcriptional mechanisms controlling direct motor neuron programming	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BAM BED BW CEL TXT WIG SRA Run Selector	Shaun Mahony	Jul 04, 2013
GSE31655	Dynamic Changes in Ezh2 Gene Occupancy Underlie Its Involvement in Neural Stem Cell Self-Renewal and Differentiation towards Oligodendrocytes	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BAM BW WIG SRA Run Selector	Falak Sher	Jul 30, 2012
GSE32880	Conserved Function of lincRNAs in Vertebrate Embryonic Development Despite Rapid Sequence Evolution	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	16	BAM BED BW SRA Run Selector	Igor Ulitsky	Dec 22, 2011
GSE33023	mRNA-seq of L1 larvae recovering from arrest	Expression profiling by high throughput sequencing	Caenorhabditis elegans	10	BAM BEDGRAPH BW GTF TXT SRA Run Selector	Colin Maxwell	Apr 25, 2012
GSE33664	Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	10	BAM BED BW TXT SRA Run Selector	Guoliang Li	Jan 20, 2012
GSE33816	RNA-seq analysis of K562 cells (K562-shX) with stable integration of a tet-inducible shRNA targeting a candidate (X) transcription factor from ENCODE/HudsonAlpha-MyersLab	Expression profiling by high throughput sequencing	Homo sapiens	12	BAM BW GTF SRA Run Selector	Anita Bansal	Dec 01, 2011
GSE39435	Induced Cdx2 binding in embryonic stem cells and endodermal cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BAM BW WIG SRA Run Selector	Shaun Mahony	Mar 27, 2014
GSE42413	The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	56	BAM BED BW SRA Run Selector	Justin Cotney	Jul 02, 2013
GSE57369	The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	26	BAM BED BW TXT SRA Run Selector	Justin Cotney	Jan 21, 2015
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE103432	GTSF-1 is required for the formation of an RNA-dependent RNA Polymerase complex in C. elegans	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	18	BAM BW SRA Run Selector	Emil Karaulanov	May 11, 2018
GSE109003	Xrn2 accelerates termination by RNA polymerase II, which is underpinned by CPSF73 activity	Expression profiling by high throughput sequencing Other	Homo sapiens	10	BAM BW SRA Run Selector	Steven West	Feb 13, 2018
GSE109561	Transcriptome-wide view of endosomal mRNP transport	Other Expression profiling by high throughput sequencing	Mycosarcoma maydis	12	BAM BW	Kathi Zarnack	Dec 10, 2018
GSE141290	Pervasive promoter-proximal regulation in archaea	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Saccharolobus solfataricus Saccharolobus solfataricus P2	84	BAM BW	Finn Werner	Sep 14, 2020
GSE144244	m6A RNA methylation regulates promoter proximal pausing of RNA Pol II (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	44	BAM BW SRA Run Selector	Junaid Akhtar	Jul 28, 2021
GSE155280	scChIX-seq infers dynamic relationships between histone modifications in single cells	Other	Mus musculus	33	BAM BW CSV RDATA TXT SRA Run Selector	Jake Yeung	Nov 30, 2021