GEO Browser - GEO

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68 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247				COV
GSE245426	A maternal-effect Padi6 variant causes nuclear and cytoplasmic abnormalities in oocytes as well 2 as failure of epigenetic reprogramming and zygotic genome activation in embryos	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	193	COV VCF	Francesco Cecere	Oct 18, 2023
GSE261788	AMAR-seq: automated multimodal sequencing of DNA methylation, chromatin accessibility, and RNA expression with single-cell resolution	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	83	COV TXT	Xi Zeng	Mar 21, 2024
GSE195556	An engineered Sox17 induces somatic to neural stem cell fate transition independently from pluripotency reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	COV MTX TSV	Mingxi WENG	Jul 19, 2023
GSE225305	An engineered Sox17 induces somatic to neural stem cell fate transition independently from pluripotency reprogramming [RRBS]	Methylation profiling by high throughput sequencing	Mus musculus	13	COV	Mingxi WENG	Jul 19, 2023
GSE245383	Astrocyte-produced HB-EGF limits autoimmune CNS pathology	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	14	COV	Mathias Linnerbauer	Dec 01, 2023
GSE245382	Astrocyte-produced HB-EGF limits autoimmune CNS pathology [WGBS]	Methylation profiling by high throughput sequencing	Mus musculus	8	COV	Mathias Linnerbauer	Dec 01, 2023
GSE273728	Autoimmune CD4 T cells maintain function and survive in chronic autoimmunity by restricting terminal differentiation (whole genome enzymatic methylation sequencing)	Methylation profiling by high throughput sequencing	Mus musculus	16	COV	Maria Bettini	Oct 12, 2024
GSE228707	Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	55	COV NARROWPEAK	Moshe Szyf	Jun 30, 2023
GSE228705	Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD [mouse APOBEC-seq]	Methylation profiling by high throughput sequencing	Mus musculus	12	COV	Moshe Szyf	Jun 30, 2023
GSE247019	Cancer-associated DNA Hypermethylation of Polycomb Targets Requires DNMT3A Dual Recognition of histone H2AK119 Ubiquitination and the Nucleosome Acidic Patch	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	134	BW COV	Kristjan H. Gretarsson	Aug 28, 2024
GSE247018	Cancer-associated DNA Hypermethylation of Polycomb Targets Requires DNMT3A Dual Recognition of histone H2AK119 Ubiquitination and the Nucleosome Acidic Patch [EM-Seq]	Methylation profiling by high throughput sequencing	Mus musculus	18	COV	Kristjan H. Gretarsson	Aug 31, 2024
GSE247013	Cancer-associated DNA Hypermethylation of Polycomb Targets Requires DNMT3A Dual Recognition of histone H2AK119 Ubiquitination and the Nucleosome Acidic Patch [RRBS]	Methylation profiling by high throughput sequencing	Mus musculus	24	COV	Kristjan H. Gretarsson	Aug 31, 2024
GSE213749	Comparison of global DNA methylation analysis by whole genome bisulfite sequencing and the Infinium Mouse Methylation BeadChip using fresh and fresh-frozen mouse epidermis	Methylation profiling by array Methylation profiling by high throughput sequencing	Mus musculus	24	COV IDAT	Olivia Luxford Meyer	Sep 23, 2022
GSE252583	Context-specific requirements of Tet enzymes in the modulation of CD8 effector and memory cell fates during acute viral infection	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	27	COV NARROWPEAK	Priya D Issuree	Apr 01, 2025
GSE252581	Context-specific requirements of Tet enzymes in the modulation of CD8 effector and memory cell fates during acute viral infection [EM-seq]	Methylation profiling by high throughput sequencing	Mus musculus	8	COV	Priya D Issuree	Apr 01, 2025
GSE224447	DNA methylation and gene expression changes in mice induced by parabiosis and recovery	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Methylation profiling by array	Homo sapiens Macaca mulatta Mus musculus Rattus Rattus norvegicus	233	COV IDAT TXT	Jesse Poganik	Apr 21, 2023
GSE167237	DNA methylation regulates haematopoietic development	Methylation profiling by high throughput sequencing	Mus musculus	18	COV SRA Run Selector	Di Liu	Feb 23, 2021
GSE169102	DNA methyltransferase 1 modulates mitochondrial function through bridging m5C RNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	187	BW COV MTX TSV TXT	Guoping Fan	May 05, 2025
GSE176461	DNA sequence and chromatin modifiers determine epigenetic bistability at imprinting control regions	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	7	COV TAB WIG	Tuncay Baubec	Jul 20, 2022
GSE176460	DNA sequence determines epigenetic bistability at imprinting control regions [BS-Seq]	Methylation profiling by high throughput sequencing	Mus musculus	2	COV SRA Run Selector	Tuncay Baubec	Jul 20, 2022