GEO Browser - GEO

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95 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417				BW
GSE260914	ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	78	BED BW HIC MCOOL TSV TXT	Mikhail Magnitov	Mar 08, 2024
GSE140975	Wapl repression by Pax5 promotes loop extrusion and V gene recombination at the Igh locus	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	170	BED BEDGRAPH BW HIC TXT SRA Run Selector	Mortiz M Gaidt	Jul 01, 2020
GSE62151	Upstream Anti-sense Promoters Act as Local Enhancers of Mammalian Protein-coding Genes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	17	BEDGRAPH BW WIG SRA Run Selector	Karen Adelman	Jun 23, 2015
GSE233842	Transcription and DNA Replication Shapes DNA Break Dynamics in Long Neuronal Genes	Other	Mus musculus	79	BW TLX	Pei-Chi Wei	Mar 18, 2024
GSE129529	Topoisomerase II-induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	73	BW TXT	Yaakov Maman	Apr 24, 2019
GSE97866	Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BW SRA Run Selector	Jelena M Telenius	Jun 14, 2017
GSE97871	Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	88	BW WIG	Jelena M Telenius	Jun 14, 2017
GSE242974	The role of SMC3 in heart development by regulating super-enhancer associated genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	35	BED BEDGRAPH BW MTX TSV XLS XLSX	bowen zhang	Sep 14, 2023
GSE104098	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture [ChIP-Seq 2]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED BW SRA Run Selector	Bo Wen	Dec 03, 2017
GSE95113	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture [ChIP-Seq 1]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED BW SRA Run Selector	Bo Wen	Dec 03, 2017
GSE95116	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BW HIC TXT	Bo Wen	Dec 03, 2017
GSE48436	The THO complex regulates pluripotency gene mRNA export to control embryonic stem cell self-renewal and somatic cell reprogramming (RNA-IP)	Expression profiling by high throughput sequencing	Mus musculus	2	BW SRA Run Selector	Li Wang	Nov 30, 2013
GSE51534	The THO complex regulates pluripotency gene mRNA export to control embryonic stem cell self-renewal and somatic cell reprogramming	Expression profiling by array Expression profiling by high throughput sequencing	Mus musculus	8	BW TXT	Li Wang	Nov 30, 2013
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE160966	The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by pausing POL II at pro-differentiation genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	83	BW H5 TXT	Shaun Mahony	Jan 07, 2022
GSE163365	Targeting BMI-1 in B cells restores effective humoral immune responses and controls chronic viral infection	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	28	BW	Andrea Di Pietro	Oct 11, 2021
GSE116208	TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer	Methylation profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	83	BW	Anjana Rao	Apr 29, 2019
GSE146999	Start codon disruption with CRISPR/Cas9 prevents murine Fuchs' endothelial corneal dystrophy	Other	Homo sapiens Mus musculus	6	BW	Hironori Uehara	Sep 01, 2020
GSE161699	Splicing regulation of large exons secures phase-separation of transcription factors in vertebrates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BW	Akio Masuda	Jul 20, 2021
GSE92590	Simultaneous transcriptional and epigenomic profiling from specific cell types within heterogeneous tissues in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BW SRA Run Selector	Evan Rosen	Jan 24, 2017