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BLAST the Concise Protein Database

This database consists of all proteins from complete genomes used in the protein cluster database (ProtClustDB). We have precalculated clusters of similar proteins at the genus-level and one representative is chosen from each cluster in order to reduce the dataset. The result is reduced search times through the elimination of redundant proteins while providing a broader taxonomic view.

Examples (click to select):
  • NP_417801 - ribosomal protein S12
  • NP_418421 - thiamine-phosphate pyrophosphorylase
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    Expect Filter Word Size Matrix Gap Opening Cost Gap Extension Cost

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