Complete genomes: Coronaviridae
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  Coronaviridae - 60 complete genomes
Coronavirinae  [2] Orthocoronavirinae  [58]
* The list view for each taxonomy node shows only the next level of sublineages.
* Unclassified/unassigned names are written in copper

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Genome Accession RefSeq type Source information Segm Length  Protein  Neighbors Host Created Updated
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Go to the top of the page Coronavirinae
    toggle on/offBat coronavirus complete isolate:CMR704-P12 2 58617 nt 20  vertebrates 05/15/2020 11/22/2020
    Rodent coronavirus NC_046954 complete isolate:RtMruf-CoV-2/JL2014 - 31393 nt 1  vertebrates 04/12/2020 11/13/2020
Go to the top of the page Orthocoronavirinae
    Alphacoronavirus Bat-CoV/P.kuhlii/Italy/3398-19/2015 NC_046964 complete strain:Bat-CoV/P.kuhlii/Italy/3398-19/2015 - 28128 nt vertebrates 04/12/2020 04/12/2020
    Bat Hp-betacoronavirus/Zhejiang2013 NC_025217 complete isolate:Zhejiang2013 - 31491 nt 10  vertebrates 10/03/2014 08/25/2020
    Bat coronavirus 1A NC_010437 complete strain:AFCD62 - 28326 nt 3  vertebrates 03/13/2008 08/13/2018
    Bat coronavirus BM48-31/BGR/2008 NC_014470 complete strain:BtCoV/BM48-31/BGR/2008 - 29276 nt vertebrates 08/27/2010 08/13/2018
    Bat coronavirus CDPHE15/USA/2006 NC_022103 complete strain:bat/USA/CDPHE15/2006 - 28035 nt 1  vertebrates 08/20/2013 08/13/2018
    Beluga whale coronavirus SW1 NC_010646 complete isolate:SW1 - 31686 nt 14  3  vertebrates 05/01/2008 08/13/2018
    Middle East respiratory syndrome-related coronavirus
          Betacoronavirus England 1 NC_038294 complete strain:England 1; isolate:H123990006 - 30111 nt 11  672  human, vertebrates 08/24/2018 11/22/2020
          Middle East respiratory syndrome-related coronavirus NC_019843 complete strain:HCoV-EMC; isolate:HCoV-EMC/2012 - 30119 nt 11  672  human, vertebrates 12/13/2012 08/08/2020
    Betacoronavirus Erinaceus/VMC/DEU/2012 NC_039207 complete isolate:ErinaceusCoV/2012-174/GER/2012 - 30148 nt 12  2  vertebrates 08/24/2018 08/03/2020
    Betacoronavirus HKU24 NC_026011 complete strain:HKU24-R05005I - 31249 nt 11  6  vertebrates 01/07/2015 11/19/2020
    Betacoronavirus 1
          Bovine coronavirus NC_003045 complete isolate:BCoV-ENT - 31028 nt 12  336  human, vertebrates 08/02/2001 09/17/2020
          Human coronavirus OC43 NC_006213 complete strain:ATCC VR-759; serotype:OC43 - 30741 nt 10  336  human, vertebrates 02/21/2019 09/16/2020
    BtMr-AlphaCoV/SAX2011 NC_028811 complete isolate:BtMr-SAX2011 - 27935 nt vertebrates 01/05/2016 08/13/2018
    BtNv-AlphaCoV/SC2013 NC_028833 complete isolate:BtNv-SC2013 - 27783 nt vertebrates 01/05/2016 08/13/2018
    BtRf-AlphaCoV/HuB2013 NC_028814 complete isolate:BtRf-HuB2013 - 27608 nt 1  vertebrates 01/05/2016 08/13/2018
    BtRf-AlphaCoV/YN2012 NC_028824 complete isolate:BtRf-YN2012 - 26975 nt vertebrates 01/05/2016 08/13/2018
    Bulbul coronavirus HKU11-934 NC_011547 complete - 26487 nt 1  vertebrates 08/24/2018 08/24/2018
    Human coronavirus 229E
          Camel alphacoronavirus NC_028752 complete isolate:camel/Riyadh/Ry141/2015 - 27395 nt 77  human, vertebrates 01/05/2016 08/13/2018
          Human coronavirus 229E NC_002645 complete - 27317 nt 77  human, vertebrates 01/11/2001 08/17/2021
    Canada goose coronavirus NC_046965 complete strain:Cambridge_Bay_2017 - 28539 nt 16  vertebrates 04/12/2020 04/12/2020
    Common moorhen coronavirus HKU21 NC_016996 complete strain:HKU21-8295 - 26223 nt vertebrates 03/30/2012 08/13/2018
    Coronavirus AcCoV-JC34 NC_034972 complete isolate:AcCoV-JC34 - 27682 nt vertebrates 06/13/2017 08/13/2018
    Avian coronavirus
          Duck coronavirus NC_048214 complete isolate:DK/GD/27/2014 - 27754 nt 12  442  human, vertebrates 05/15/2020 05/15/2020
          toggle on/offInfectious bronchitis virus complete strain:Beaudette 2 55072 nt 20  human, vertebrates 06/12/1993 08/13/2018
          Turkey coronavirus NC_010800 complete isolate:MG10 - 27657 nt 11  442  human, vertebrates 06/03/2008 08/13/2018
    Alphacoronavirus 1
          Feline infectious peritonitis virus NC_002306 complete serotype:2; isolate:79-1146 - 29355 nt 148  vertebrates 05/11/2000 08/13/2018
          Swine enteric coronavirus NC_028806 complete strain:Italy/213306/2009 - 28111 nt 148  vertebrates 01/05/2016 08/13/2018
          Transmissible gastroenteritis virus NC_038861 complete strain:Purdue; isolate:PUR46-MAD - 28586 nt 148  vertebrates 05/11/2000 08/24/2018
    Ferret coronavirus NC_030292 complete isolate:FRCoV-NL-2010 - 28434 nt 4  vertebrates 06/10/2016 08/13/2018
    Human coronavirus HKU1 NC_006577 complete isolate:HKU1 - 29926 nt 46  human 12/28/2004 11/20/2020
    Human coronavirus NL63 NC_005831 complete strain:Amsterdam I - 27553 nt 68  human 03/23/2004 08/13/2018
    Lucheng Rn rat coronavirus NC_032730 complete isolate:Lucheng-19 - 28763 nt 3  vertebrates 01/17/2017 09/30/2021
    Magpie-robin coronavirus HKU18 NC_016993 complete strain:HKU18-chu3 - 26689 nt vertebrates 03/30/2012 08/13/2018
    Miniopterus bat coronavirus HKU8 NC_010438 complete strain:AFCD77 - 28773 nt 4  vertebrates 03/13/2008 08/13/2018
    Mink coronavirus strain WD1127 NC_023760 complete strain:WD1127 - 28941 nt 10  2  vertebrates 03/12/2014 08/13/2018
    Munia coronavirus HKU13-3514 NC_011550 complete - 26552 nt vertebrates 11/13/2008 08/13/2018
    Murine coronavirus
          toggle on/offMurine hepatitis virus complete strain:A59 2 62692 nt 19  vertebrates 05/15/2020 09/16/2020
          Rat coronavirus Parker NC_012936 complete strain:Parker - 31250 nt 10  33  vertebrates 07/13/2009 09/27/2020
    toggle on/offNL63-related bat coronavirus complete strain:BtKYNL63-9b 2 57042 nt 16  vertebrates 05/15/2020 05/15/2020
    Night heron coronavirus HKU19 NC_016994 complete strain:HKU19-6918 - 26077 nt vertebrates 03/30/2012 08/13/2018
    Pipistrellus bat coronavirus HKU5 NC_009020 complete strain:HKU5-1 LMH03f - 30482 nt 11  7  vertebrates 02/21/2007 11/20/2020
    Porcine coronavirus HKU15 NC_039208 complete strain:HKU15-155 - 25425 nt 136  vertebrates 08/24/2018 08/27/2021
    Porcine epidemic diarrhea virus NC_003436 complete strain:CV777 - 28033 nt 796  vertebrates 04/23/2001 08/13/2018
    Rabbit coronavirus HKU14 NC_017083 complete strain:HKU14-1 - 31100 nt 12  3  vertebrates 07/10/2012 11/14/2020
    Rhinolophus bat coronavirus HKU2 NC_009988 complete strain:HKU2/GD/430/2006 - 27165 nt 8  vertebrates 11/20/2007 08/13/2018
    Rousettus bat coronavirus NC_030886 complete isolate:GCCDC1 356 - 30161 nt 10  2  vertebrates 09/12/2016 09/03/2020
    Rousettus bat coronavirus HKU10 NC_018871 complete isolate:183A - 28494 nt 7  vertebrates 10/18/2012 08/13/2018
    Rousettus bat coronavirus HKU9 NC_009021 complete strain:HKU9-1 BF_005I - 29114 nt 9  vertebrates 02/21/2007 11/22/2020
    Severe acute respiratory syndrome-related coronavirus
          SARS coronavirus Tor2 NC_004718 complete isolate:Tor2 - 29751 nt 15  368  human, vertebrates 04/14/2003 11/20/2020
          Severe acute respiratory syndrome coronavirus 2 NC_045512 complete isolate:Wuhan-Hu-1 - 29903 nt 12  368  human, vertebrates 01/13/2020 07/18/2020
    Scotophilus bat coronavirus 512 NC_009657 complete strain:BtCoV/512/2005 - 28203 nt vertebrates 07/24/2007 08/13/2018
    Shrew coronavirus NC_046955 complete isolate:Shrew-CoV/Tibet2014 - 27102 nt vertebrates 04/12/2020 04/12/2020
    Sparrow coronavirus HKU17 NC_016992 complete strain:HKU17-6124 - 26083 nt vertebrates 03/30/2012 08/13/2018
    Thrush coronavirus HKU12-600 NC_011549 complete - 26396 nt vertebrates 11/13/2008 08/13/2018
    Tylonycteris bat coronavirus HKU4 NC_009019 complete strain:HKU4-1 B04f - 30286 nt 11  9  vertebrates 02/21/2007 11/20/2020
    toggle on/offWencheng Sm shrew coronavirus complete isolate:Xingguo-101 2 51979 nt 10  vertebrates 07/14/2017 09/30/2021
    White-eye coronavirus HKU16 NC_016991 complete strain:HKU16-6847 - 26041 nt vertebrates 03/30/2012 08/27/2021
    Wigeon coronavirus HKU20 NC_016995 complete strain:HKU20-9243 - 26227 nt 10  vertebrates 03/30/2012 08/13/2018
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