Complete genomes: Flaviviridae
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Viruses   ssRNA viruses   ssRNA positive-strand viruses, no DNA stage  
  Flaviviridae - 122 complete genomes
Flavivirus  [70] Hepacivirus  [15] Pegivirus  [9] Pestivirus  [12]
unclassified Flaviviridae  [16]
* The list view for each taxonomy node shows only the next level of sublineages.
* Unclassified/unassigned names are written in copper

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Genome Accession Source information Segm Length  Protein  Neighbors Host Created Updated
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Aedes flavivirus NC_012932 strain:Narita-21 - 11064 nt 2  vertebrates, invertebrates, human 07/24/2009 09/29/2016
Alkhumra hemorrhagic fever virus NC_004355 strain:1176 - 10685 nt 26  vertebrates, invertebrates, human 09/29/2001 12/08/2008
Anopheles flavivirus variant 1 NC_031327 - 10588 nt 1  invertebrates 10/05/2016 10/17/2016
Apis flavivirus NC_035071 isolate:RI-A - 20414 nt invertebrates 06/15/2017 06/20/2017
Apoi virus NC_003676 strain:ApMAR - 10116 nt vertebrates, invertebrates, human 05/19/2000 02/10/2015
Aroa virus NC_009026 strain:Bussuquara virus; isolate:BeAn 4073 - 10815 nt 3  vertebrates, invertebrates, human 02/20/2007 12/27/2016
Atypical porcine pestivirus 1 NC_030653 isolate:Bavaria S5/9 - 10908 nt 8  vertebrates 07/25/2016 07/25/2016
Bagaza virus NC_012534 strain:DakAr B209 - 10941 nt 12  vertebrates, invertebrates, human 04/06/2009 12/27/2016
Bamaga virus NC_033725 isolate:CY4270 - 10203 nt invertebrates 02/16/2017 02/16/2017
Bat hepacivirus NC_031947 isolate:PDB-452 - 9224 nt vertebrates, human 11/15/2016 09/20/2017
Border disease virus NC_003679 strain:X818; Clover Lane - 12333 nt 10  vertebrates 05/15/1998 02/10/2015
Bouboui virus NC_033693 strain:DAK AR B490 - 10173 nt vertebrates, invertebrates, human 02/16/2017 02/16/2017
Bovine hepacivirus NC_026797 isolate:GHC25 - 8850 nt 4  vertebrates, human 04/13/2015 06/17/2016
Bovine viral diarrhea virus 1 NC_001461 strain:NADL - 12573 nt 58  vertebrates 08/02/1993 02/10/2015
Bovine viral diarrhea virus 2 NC_002032 strain:C413; sub-species:border disease virus strain C413 - 12255 nt 56  vertebrates 06/11/1997 02/10/2015
Bovine viral diarrhea virus 3 Th/04_KhonKaen NC_012812 strain:Th/04_KhonKaen - 12337 nt 14  vertebrates 06/17/2009 01/07/2010
Cacipacore virus NC_026623 strain:BeAn 3276000 - 10284 nt vertebrates 03/06/2015 12/28/2016
Cell fusing agent virus NC_001564 strain:Galveston - 10682 nt 1  vertebrates, invertebrates, human 08/03/1993 10/04/2017
Chaoyang virus NC_017086 isolate:HLD115 - 10733 nt 1  vertebrates, invertebrates, human 07/10/2012 07/09/2016
Classical swine fever virus NC_002657 strain:strain Eystrup - 12301 nt 121  vertebrates 01/28/2001 02/10/2015
Culex flavivirus NC_008604 strain:Tokyo - 10837 nt 23  vertebrates, invertebrates, human 11/30/2006 06/28/2016
Culiseta flavivirus NC_030290 strain:502-13 - 10864 nt invertebrates 06/10/2016 06/10/2016
Dengue virus 1 NC_001477 type:1 - 10735 nt 4809  vertebrates, invertebrates, human 02/28/1997 09/15/2015
Dengue virus 2 NC_001474 strain:16681 - 10723 nt 4809  vertebrates, invertebrates, human 08/02/1993 09/15/2015
Dengue virus 3 NC_001475 isolate:D3/H/IMTSSA-SRI/2000/1266 - 10707 nt 4809  vertebrates, invertebrates, human 08/02/1993 09/14/2015
Dengue virus 4 NC_002640 - 10649 nt 4809  vertebrates, invertebrates, human 01/03/2001 02/11/2016
Donggang virus NC_016997 isolate:DG0909 - 10791 nt vertebrates, invertebrates, human 03/23/2012 07/02/2016
Edge Hill virus NC_030289 strain:YMP 48 - 10206 nt vertebrates, invertebrates, human 06/10/2016 06/10/2016
Entebbe bat virus NC_008718 strain:UgIL-30 - 10510 nt 2  vertebrates, invertebrates, human 12/27/2006 12/08/2008
Equine hepacivirus JPN3/JAPAN/2013 NC_024889 strain:JPN3 - 9355 nt 5  vertebrates 09/18/2014 11/17/2016
Equine pegivirus 1 NC_020902 isolate:C0035 - 11197 nt vertebrates 04/05/2013 06/09/2016
GB virus C NC_001710 - 9392 nt 80  vertebrates, human 01/27/1996 12/08/2008
Gadgets Gully virus NC_033723 - 10251 nt vertebrates, invertebrates, human 02/16/2017 02/16/2017
Guereza hepacivirus NC_031950 isolate:GHV-2 BWC04 - 10471 nt 2  vertebrates, human 11/17/2016 11/21/2016
Hanko virus NC_030401 - 10158 nt vertebrates, invertebrates, human 06/30/2016 07/12/2016
Hepacivirus L NC_031916 isolate:PDB-112 - 8916 nt vertebrates, human 11/15/2016 09/18/2017
toggle on/offHepatitis C virus serotype:1a; isolate:H77 2 19089 nt vertebrates, human 08/09/1997 06/17/2016
Hepatitis C virus genotype 2 NC_009823 strain:HC-J6CH - 9711 nt 2177  vertebrates, human 10/01/2007 08/23/2016
Hepatitis C virus genotype 3 NC_009824 isolate:NZL1 - 9456 nt 2177  vertebrates, human 10/01/2007 08/23/2016
Hepatitis C virus genotype 4 NC_009825 isolate:ED43 - 9355 nt 2177  vertebrates, human 07/09/1997 08/23/2016
Hepatitis C virus genotype 5 NC_009826 strain:EUH1480 - 9343 nt 2177  vertebrates, human 09/12/1997 08/23/2016
Hepatitis C virus genotype 6 NC_009827 isolate:Th580 - 9628 nt 2177  vertebrates, human 10/01/2007 08/23/2016
Hepatitis GB virus B NC_001655 - 9399 nt 8  vertebrates 10/07/1999 11/20/2016
Human pegivirus 2 NC_027998 isolate:UC0125.US - 9867 nt 11  vertebrates, human 10/08/2015 05/16/2016
Ilheus virus NC_009028 strain:Original - 10755 nt 1  vertebrates, invertebrates, human 02/20/2007 12/28/2016
Ilomantsi virus NC_024805 isolate:M0724 - 10365 nt invertebrates 09/11/2014 07/12/2016
Japanese encephalitis virus NC_001437 - 10976 nt 298  vertebrates, invertebrates, human 08/02/1993 12/28/2016
Jugra virus NC_033699 strain:P-9-314 - 10173 nt vertebrates, invertebrates, human 02/16/2017 02/16/2017
Jutiapa virus NC_026620 strain:JG-128 - 10125 nt vertebrates 03/06/2015 03/06/2015
Kadam virus NC_033724 - 10215 nt vertebrates, invertebrates, human 02/16/2017 02/16/2017
Kama virus NC_023439 strain:LEIV-20776Tat - 10688 nt invertebrates 02/13/2014 02/13/2014
Kamiti River virus NC_005064 isolate:SR-82 - 11375 nt 1  vertebrates, invertebrates, human 08/13/2003 06/22/2016
Karshi virus NC_006947 strain:LEIV 2247; serotype:tick-borne encephalitis group - 10653 nt 3  vertebrates, invertebrates, human 04/07/2005 12/01/2009
Karumba virus NC_035118 isolate:KRBV 1892 - 10646 nt 1  invertebrates 06/27/2017 06/27/2017
Kedougou virus NC_012533 strain:DakAar D1470 - 10723 nt vertebrates, invertebrates, human 04/06/2009 12/27/2016
Kokobera virus NC_009029 strain:AusMRM 32 - 10874 nt 4  vertebrates, invertebrates, human 02/20/2007 12/27/2016
Lammi virus NC_024806 strain:Mekrijarvi 2007; isolate:M0719 - 10320 nt 1  invertebrates 09/11/2014 07/12/2016
Langat virus NC_003690 strain:TP21 - 10943 nt 2  vertebrates, invertebrates, human 06/11/2000 11/30/2009
Linda virus NC_035432 strain:Austria1 - 12614 nt vertebrates 07/19/2017 07/19/2017
Louping ill virus NC_001809 strain:369/T2 - 10871 nt 4  vertebrates, invertebrates, human 04/29/1997 02/10/2015
Mac Peak virus NC_035187 isolate:McPV 150840 - 10026 nt invertebrates 07/14/2017 07/14/2017
Macrosiphum euphorbiae virus 1 NC_028137 isolate:K01 - 22780 nt invertebrates 11/01/2015 05/24/2017
Meaban virus NC_033721 - 10266 nt vertebrates, invertebrates, human 02/16/2017 02/16/2017
Menghai flavivirus NC_034204 isolate:MHAedFV1 - 10897 nt invertebrates 03/14/2017 03/14/2017
Mercadeo virus NC_027819 isolate:ER-M10 - 10938 nt 1  vertebrates, invertebrates, human 09/14/2015 07/18/2016
Modoc virus NC_003635 strain:M544 - 10600 nt vertebrates, invertebrates, human 02/23/2002 05/06/2009
toggle on/offMogiana tick virus isolate:MGTV/V4/11 4 11025 nt invertebrates 03/17/2017 03/17/2017
Montana myotis leukoencephalitis virus NC_004119 - 10690 nt vertebrates, invertebrates, human 08/22/2002 05/06/2009
Mosquito flavivirus NC_021069 isolate:LSFlaviV-A20-09 - 10865 nt 5  vertebrates, invertebrates, human 04/22/2013 02/24/2014
Murray Valley encephalitis virus NC_000943 - 11014 nt 14  vertebrates, invertebrates, human 11/02/1999 12/27/2016
Nakiwogo virus NC_030400 strain:Uganda08 - 10122 nt invertebrates 06/30/2016 07/12/2016
New Mapoon virus NC_032088 strain:CY1014 - 10864 nt 4  vertebrates, invertebrates, human 12/08/2016 12/27/2016
Nhumirim virus NC_024017 strain:BrMS-MQ10 - 10891 nt invertebrates 04/16/2014 08/30/2016
Nienokoue virus NC_024299 isolate:B51/CI/2004 - 10878 nt invertebrates 06/13/2014 09/09/2016
Norway rat hepacivirus 1 NC_025672 isolate:NrHV-1/NYC-C12 - 8976 nt 1  vertebrates, human 11/19/2014 11/18/2016
Norway rat hepacivirus 2 NC_025673 isolate:NrHV-2/NYC-E43 - 8568 nt vertebrates, human 11/19/2014 11/18/2016
Norway rat pegivirus NC_025679 isolate:NrPgV/NYC-E13 - 10023 nt vertebrates 11/19/2014 11/19/2014
Norway rat pestivirus NC_025677 isolate:NrPV/NYC-D23 - 12983 nt vertebrates 11/19/2014 11/19/2014
Nounane virus NC_033715 strain:Nounane_B3 - 10755 nt vertebrates, invertebrates, human 02/16/2017 02/16/2017
Ntaya virus NC_018705 isolate:IPDIA - 10943 nt 1  vertebrates, invertebrates, human 10/04/2012 12/28/2016
Ochlerotatus caspius flavivirus NC_034242 isolate:1608 - 10370 nt vertebrates, invertebrates, human 04/05/2017 04/05/2017
Omsk hemorrhagic fever virus NC_005062 strain:Bogoluvovska - 10787 nt 3  vertebrates, invertebrates, human 08/12/2003 12/01/2009
Palm Creek virus NC_033694 isolate:56 - 10095 nt vertebrates, invertebrates, human 02/16/2017 02/16/2017
Paraiso Escondido virus NC_027999 isolate:Ecuador2012 - 10761 nt vertebrates, invertebrates, human 10/08/2015 10/08/2015
Parramatta River virus NC_027817 isolate:92-B115745 - 10893 nt vertebrates, invertebrates, human 09/14/2015 07/25/2016
Pegivirus A NC_001837 - 9550 nt 56  vertebrates 09/23/1997 06/10/2016
Pegivirus B NC_030291 strain:68 - 9630 nt 3  vertebrates 06/10/2016 06/10/2016
Pestivirus giraffe-1 H138 NC_003678 isolate:giraffe-1 H138 - 12602 nt 1  vertebrates 10/16/1999 07/26/2016
Pestivirus strain Aydin/04-TR NC_018713 strain:Aydin/04-TR - 12292 nt 1  vertebrates 10/04/2012 10/04/2012
Phnom Penh bat virus NC_034007 strain:30834_A38 - 10131 nt vertebrates, invertebrates, human 03/05/2017 03/05/2017
Porcine pegivirus NC_034442 isolate:PPgV_903/Ger/2013 - 9760 nt vertebrates 05/05/2017 05/05/2017
Porcine pestivirus isolate Bungowannah NC_023176 isolate:Bungowannah - 12656 nt vertebrates 01/02/2014 01/02/2014
Potiskum virus NC_029054 strain:IBAN 10069 - 10173 nt vertebrates, invertebrates, human 09/26/2016 10/06/2017
Powassan virus NC_003687 strain:LB - 10839 nt 16  vertebrates, invertebrates, human 07/26/1993 12/08/2008
Pronghorn antelope pestivirus NC_024018 - 12273 nt vertebrates 04/21/2014 11/06/2014
Quang Binh virus NC_012671 isolate:VN180 - 10865 nt 5  vertebrates, invertebrates, human 05/11/2009 06/28/2016
Rio Bravo virus NC_003675 strain:RiMAR - 10140 nt 1  vertebrates, invertebrates, human 03/03/2000 02/10/2015
Rodent hepacivirus NC_021153 isolate:RHV-339 - 8879 nt vertebrates, human 05/01/2013 02/10/2015
Rodent pegivirus NC_021154 isolate:CC61 - 11279 nt vertebrates 05/01/2013 06/09/2016
Saboya virus NC_033697 strain:Dak AR D4600 - 10173 nt vertebrates, invertebrates, human 02/16/2017 02/16/2017
Saumarez Reef virus NC_033726 - 10269 nt vertebrates, invertebrates, human 02/16/2017 02/16/2017
Sepik virus NC_008719 strain:MK7148 - 10793 nt 1  vertebrates, invertebrates, human 12/27/2006 12/08/2008
Simian pegivirus NC_024377 strain:SPgVkrc; isolate:SPgVkrc_RC08 - 9525 nt 56  vertebrates 06/24/2014 06/24/2014
Sokoluk virus NC_026624 strain:LEIV-400K - 10242 nt vertebrates 03/06/2015 03/06/2015
Soybean cyst nematode virus 5 NC_024077 strain:ScV5 - 19199 nt invertebrates 05/15/2014 11/06/2014
Spanish goat encephalitis virus NC_027709 isolate:AstGoatIREC2011 - 10870 nt vertebrates, invertebrates, human 08/18/2015 08/18/2015
Spondweni virus NC_029055 strain:SM-6 V-1 - 10290 nt vertebrates, invertebrates, human 02/05/2016 02/11/2016
St. Louis encephalitis virus NC_007580 strain:Kern217 - 10940 nt 15  vertebrates, invertebrates, human 11/04/2005 12/22/2016
T'Ho virus NC_034151 strain:T'Ho-Mex07 - 10937 nt vertebrates, invertebrates, human 05/01/2017 06/26/2017
Tamana bat virus NC_003996 - 10053 nt 1  vertebrates, invertebrates, human 04/17/2002 02/10/2015
Tembusu virus NC_015843 strain:JS804 - 10990 nt 85  vertebrates, invertebrates, human 07/15/2011 12/28/2016
Tick-borne encephalitis virus NC_001672 - 11141 nt 156  vertebrates, invertebrates, human 09/05/1995 02/10/2015
Tyuleniy virus NC_023424 strain:LEIV-6C - 10673 nt 1  invertebrates 02/06/2014 02/06/2014
Uganda S virus NC_033698 - 10182 nt vertebrates, invertebrates, human 02/16/2017 02/16/2017
Usutu virus NC_006551 strain:Vienna 2001 - 11066 nt 127  vertebrates, invertebrates, human 12/17/2004 12/28/2016
Wesselsbron virus NC_012735 strain:SAH177 - 10814 nt 5  vertebrates, invertebrates, human 06/02/2009 01/07/2010
toggle on/offWest Nile virus strain:956 2 21991 nt vertebrates, invertebrates, human 08/03/1993 08/24/2016
Xishuangbanna aedes flavivirus NC_034017 isolate:XSBNAeFV - 10884 nt invertebrates 03/05/2017 03/05/2017
Yaounde virus NC_034018 strain:Dak Ar Y276 - 10293 nt vertebrates, invertebrates, human 03/05/2017 03/05/2017
Yellow fever virus NC_002031 strain:17D vaccine strain - 10862 nt 76  vertebrates, invertebrates, human 11/18/1986 02/10/2015
Yokose virus NC_005039 strain:Oita 36 - 10857 nt vertebrates, invertebrates, human 07/22/2003 08/11/2006
toggle on/offZika virus strain:Natal RGN 2 21602 nt vertebrates, invertebrates, human 09/22/2017 10/01/2017
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