Physcomitrella patens
Representative genome: Physcomitrella patens (assembly Phypa V3)
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BLAST against Physcomitrella patens genome

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ID: 383
Organism ImagePhyscomitrella patens

Moss, used as a model plant for functional genomics, evo-devo studies and comparative genomics.

Lineage: Eukaryota[3951]; Viridiplantae[419]; Streptophyta[359]; Embryophyta[356]; Bryophyta[1]; Bryophytina[1]; Bryopsida[1]; Funariidae[1]; Funariales[1]; Funariaceae[1]; Physcomitrella[1]; Physcomitrella patens[1]
Physcomitrella patens is a moss, a non-seed plant, belonging to the phylum Bryophyta. It exhibits a short life cycle which is predominantly gametophytic with a reduced sporophytic generation. It is being used as an experimental organism for reverse genetic studies which is made easier due to its dominant haploid phase and highly efficient homologous More...

Summary

Submitter: Moss Genome Consortium
Assembly level: Chromosome
Assembly: GCA_000002425.2 Phypa V3 scaffolds: 359 contigs: 3,002 N50: 465,069 L50: 311
BioProjects: PRJNA28131, PRJNA13064
Whole Genome Shotgun (WGS): INSDC: ABEU00000000.2
Statistics: total length (Mb): 472.081
 protein count: 48022
 GC%: 33.8892
NCBI Annotation Release:  100

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Replicon Info

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
Chr1NC_037253.1CM009316.130.2433.93,062-134721,50730
Chr2NC_037254.1CM009317.12633.92,826-113481,37528
Chr3NC_037255.1CM009318.125.5534.12,784-224351,36940
Chr4NC_037256.1CM009319.122.3433.82,264-172761,08123
Chr5NC_037257.1CM009320.120.6833.62,04912327397016
Chr6NC_037258.1CM009321.119.5333.82,170-312651,00023
Chr7NC_037259.1CM009322.118.1233.91,989-2727397817
Chr8NC_037260.1CM009323.117.9333.71,737-829883017
Chr9NC_037261.1CM009324.117.7933.81,848-1222887117
Chr10NC_037262.1CM009325.117.5333.61,821-1424786519
Chr11NC_037263.1CM009326.117.4934.31,939-824692516
Chr12NC_037264.1CM009327.117.4433.91,744-1824384818
Chr13NC_037265.1CM009328.117.2533.61,539-122087499
Chr14NC_037266.1CM009329.117.2533.82,009-1226196915
Chr15NC_037267.1CM009330.117.0133.91,777-1826587616
Chr16NC_037268.1CM009331.116.5734.11,836-1029890527
Chr17NC_037269.1CM009332.115.9834.11,7033628384517
Chr18NC_037270.1CM009333.115.7433.71,456-720068213
Chr19NC_037271.1CM009334.115.6733.81,28512021069619
Chr20NC_037272.1CM009335.115.4933.91,576821626083715
Chr21NC_037273.1CM009336.115.5134.01,313-3021071421
Chr22NC_037274.1CM009337.115.3534.01,344-2724375518
Chr23NC_037275.1CM009338.115.1434.01,467-102157538
Chr24NC_037276.1CM009339.113.7634.01,484-222777039
Chr25NC_037277.1CM009340.111.1833.41,002-101714948
Chr26NC_037278.1CM009341.110.1334.01,0664191685304
Chr27NC_037279.1CM009342.15.334.0714-111083195
MTNC_007945.1-0.1140.642324-69-
PltdNC_005087.1-0.1228.585836-130-
Un-.-3.8735.791-327883

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