Canis lupus familiaris (ID 85) - Genome

Canis lupus familiaris (dog)
Reference genome: Canis lupus familiaris (assembly ROS_Cfam_1.0)
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ID: 85

Organism Overview ; Genome Assembly and Annotation report [150] ; Organelle Annotation Report [5]

Canis lupus familiaris (dog)

dog

Lineage: Eukaryota[8697]; Metazoa[4225]; Chordata[2098]; Craniata[2075]; Vertebrata[2075]; Euteleostomi[2058]; Mammalia[637]; Eutheria[463]; Laurasiatheria[263]; Carnivora[68]; Caniformia[43]; Canidae[7]; Canis[2]; Canis lupus[2]; Canis lupus familiaris[1]

The dog, Canis lupus familiaris, is a useful model organism for medical research due to extensive genetic diversity and morphological variation within the species and to aggressive breeding practices that have resulted in inbred populations of dogs. Many breeds of dog are particularly susceptible to inherited diseases that are also common in More...

Summary

Sequence data:

genome assemblies: 150; sequence reads: 26

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 2344.09

median protein count: 64557

median GC%: 41.2033

NCBI Annotation Release:

106

Publications (limited to 20 most recent records)

Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C. Field MA, et al. Gigascience 2020 Apr 1
Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic. Ameen C, et al. Proc Biol Sci 2019 Dec 4
Stochastic anomaly of methylome but persistent SRY hypermethylation in disorder of sex development in canine somatic cell nuclear transfer. Jeong YH, et al. Sci Rep 2016 Aug 9
Genome sequence, comparative analysis and haplotype structure of the domestic dog. Lindblad-Toh K, et al. Nature 2005 Dec 8
The dog genome: survey sequencing and comparative analysis. Kirkness EF, et al. Science 2003 Sep 26
The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome. Kim KS, et al. Mol Phylogenet Evol 1998 Oct

More...

Representative (genome information for reference and representative genomes)

Reference genome:

Canis lupus familiaris ROS_Cfam_1.0

Submitter: The Roslin Institute

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	1	NC_051805.1	CM025100.1	123.31	41.7	4,251	-	9	1,888	2,383	276

Chr	2	NC_051806.1	CM025101.1	86.19	42.9	2,635	1	8	1,336	1,605	157

Chr	3	NC_051807.1	CM025102.1	92.87	40.4	1,739	-	7	1,210	1,257	171

Chr	4	NC_051808.1	CM025103.1	89.01	40.4	1,821	16	2	1,266	1,336	187

Chr	5	NC_051809.1	CM025104.1	89.57	44.3	3,525	-	26	1,478	1,861	161

Chr	6	NC_051810.1	CM025105.1	78.27	42.7	2,925	-	27	1,251	1,704	152

Chr	7	NC_051811.1	CM025106.1	81.04	41.0	2,339	-	6	1,233	1,424	177

Chr	8	NC_051812.1	CM025107.1	75.26	40.8	1,987	-	6	1,204	1,437	186

Chr	9	NC_051813.1	CM025108.1	62	46.2	3,806	-	24	1,223	1,883	118

Chr	10	NC_051814.1	CM025109.1	70.36	42.8	2,130	-	9	1,220	1,347	160

Chr	11	NC_051815.1	CM025110.1	75.54	40.3	1,773	-	11	1,000	1,180	138

Chr	12	NC_051816.1	CM025111.1	73.5	39.1	1,853	-	4	843	1,185	174

Chr	13	NC_051817.1	CM025112.1	64.04	40.2	1,368	-	3	814	931	140

Chr	14	NC_051818.1	CM025113.1	61.04	38.8	1,249	-	7	718	890	131

Chr	15	NC_051819.1	CM025114.1	65.2	40.3	1,671	1	18	1,029	1,124	120

Chr	16	NC_051820.1	CM025115.1	62.02	41.3	1,547	-	17	809	1,040	127

Chr	17	NC_051821.1	CM025116.1	65.47	41.8	1,951	-	33	1,046	1,291	145

Chr	18	NC_051822.1	CM025117.1	56.88	43.0	2,292	-	10	795	1,346	119

Chr	19	NC_051823.1	CM025118.1	55.27	38.5	736	-	2	594	594	107

Chr	20	NC_051824.1	CM025119.1	58.9	44.4	3,058	-	6	898	1,563	134

Chr	21	NC_051825.1	CM025120.1	52.14	40.2	1,471	-	3	611	1,014	152

Chr	22	NC_051826.1	CM025121.1	62.11	38.0	789	-	5	760	690	124

Chr	23	NC_051827.1	CM025122.1	53.28	40.0	1,181	-	5	638	773	126

Chr	24	NC_051828.1	CM025123.1	48.84	44.7	1,749	-	1	823	1,036	74

Chr	25	NC_051829.1	CM025124.1	51.94	41.5	1,544	1	5	778	915	112

Chr	26	NC_051830.1	CM025125.1	40.67	45.6	1,609	-	10	597	867	61

Chr	27	NC_051831.1	CM025126.1	46.25	40.2	1,869	-	2	588	945	120

Chr	28	NC_051832.1	CM025127.1	41.86	43.6	1,398	-	-	608	726	71

Chr	29	NC_051833.1	CM025128.1	42.05	38.3	674	-	5	480	548	83

Chr	30	NC_051834.1	CM025129.1	40.41	41.5	1,375	-	7	569	785	90

Chr	31	NC_051835.1	CM025130.1	39.52	39.6	670	-	1	475	542	63

Chr	32	NC_051836.1	CM025131.1	39.02	37.0	781	-	-	418	525	100

Chr	33	NC_051837.1	CM025132.1	31.65	39.3	827	-	2	467	490	59

Chr	34	NC_051838.1	CM025133.1	42.26	40.4	731	-	2	623	582	58

Chr	35	NC_051839.1	CM025134.1	26.94	41.5	565	-	102	367	591	69

Chr	36	NC_051840.1	CM025135.1	31.07	38.7	604	-	2	451	438	57

Chr	37	NC_051841.1	CM025136.1	30.93	40.2	808	-	2	542	507	50

Chr	38	NC_051842.1	CM025137.1	24.1	41.1	651	-	56	403	502	47

Chr	X	NC_051843.1	CM025138.1	127.07	40.7	2,483	-	13	803	1,758	429

Chr	Y	NC_051844.1	CM025139.1	3.94	41.2	1	-	-	4	17	12

	MT	-	CM025140.1	0.02	39.6	-	-	-	-	-	-

Un	-	.	-	35.05	42.7	332	-	-	271	640	174

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